Re: Biopython 1.70 release
Peter Cock <[email protected]> Mon, 10 Jul 2017 17:54:00 +0100
| Newsgroups | gmane.comp.python.bio.devel |
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| Message-ID | <CAKVJ-_7_9xq4aGo17eb3FyTcryK-hWqRowx_6L4K4LreZhke1w@mail.gmail.com> |
--===============0143362712170110333== Content-Type: multipart/alternative; boundary="94eb2c0764620b4e4b0553f96e69" --94eb2c0764620b4e4b0553f96e69 Content-Type: text/plain; charset="UTF-8" Excellent - thanks Ben, I'd have to retrospectively add you to the contributors listing for Biopython 1.70 (easy on GitHub and the blog post, but it won't be in the tagged version nor the source downloads). Sorry - I should have noticed this earlier. Peter On Mon, Jul 10, 2017 at 5:37 PM, Fulton, Ben <[email protected]> wrote: > Yes, I'll take care of that. > > -- > Ben Fulton > Research Technologies > Scientific Applications and Performance Tuning > Indiana University > E-Mail: [email protected] > > -----Original Message----- > From: Biopython-dev [mailto:biopython-dev-bounces+befulton= > [email protected]] On Behalf Of Peter Cock > Sent: Monday, July 10, 2017 10:51 AM > To: Ben Fulton <[email protected]> > Cc: Biopython-Dev Mailing List <[email protected]> > Subject: Re: [Biopython-dev] Biopython 1.70 release > > Hi Ben, > > While in the not too distant future I am hoping to adopt the NumPy > approach to building wheels (and installers?) [1], it would be much > appreciated if you could make all the Windows installers for Biopython 1.70. > > (In particular Python 3.6, but if possible also Python 2.7, > 3.4 and 3.5 - we no longer support Python 3.3) > > Now that we have Windows-based continuous integration up and running on > AppVeyor [2], I didn't feel it necessary to bother you in advance about > running the unit tests. > > Much obliged, > > Peter > > [1] http://mailman.open-bio.org/pipermail/biopython-dev/2017- > July/021817.html > > [2] http://mailman.open-bio.org/pipermail/biopython-dev/2017- > June/021797.html > https://ci.appveyor.com/project/biopython/biopython/history > > > On Mon, Jul 10, 2017 at 4:43 PM, Peter Cock <[email protected]> > wrote: > > Hello all, > > > > I'd like to delay the PyPI upload and official release announcement > > until someone else has confirmed they could install this - any > volunteers? > > > > http://biopython.org/DIST/biopython-1.70.tar.gz > > http://biopython.org/DIST/biopython-1.70.zip > > Checksums: > > > > $ md5sum biopython-1.70.* > > feff7a3e2777e43f9b13039b344e06ff biopython-1.70.tar.gz > > 6307ab27c257fe69b9dae4bfc3052f49 biopython-1.70.zip > > > > $ sha256sum biopython-1.70.* > > 4a7c5298f03d1a45523f32bae1fffcff323ea9dce007fb1241af092f5ab2e45b > > biopython-1.70.tar.gz > > 34312ce899f6c3fc9dea77ca997f9a8c228043d05284a0653577594aeb119d4f > > biopython-1.70.zip > > > > These are from this tagged commit on the main repository: > > > > https://github.com/biopython/biopython/tree/biopython-170 > > https://github.com/biopython/biopython/commit/4d01a84f0aa8f91863075f7f > > 0f074b4b69e53959 > > > > The revised documentation is already live: > > > > http://biopython.org/DIST/docs/api/ > > http://biopython.org/DIST/docs/tutorial/Tutorial.pdf > > http://biopython.org/DIST/docs/tutorial/Tutorial.html > > etc > > > > Peter > > > > On Mon, Jul 10, 2017 at 2:19 PM, Peter Cock <[email protected]> > wrote: > >> Thanks everyone who helped recently with resolving open issues and > >> pull requests - especially Eric who did lots last week. > >> > >> I'm going to try the release this afternoon, so please consider the > >> mast branch frozen for the time being. > >> > >> Thanks, > >> > >> Peter > _______________________________________________ > Biopython-dev mailing list > [email protected] > http://mailman.open-bio.org/mailman/listinfo/biopython-dev > --94eb2c0764620b4e4b0553f96e69 Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable <div dir=3D"ltr">Excellent - thanks Ben,<div><br></div><div>I'd have to= retrospectively add you to the contributors listing</div><div>for Biopytho= n 1.70 (easy on GitHub and the blog post, but it</div><div>won't be in = the tagged version nor the source downloads).</div><div><br></div><div>Sorr= y - I should have noticed this earlier.</div><div><br></div><div>Peter</div= ></div><div class=3D"gmail_extra"><br><div class=3D"gmail_quote">On Mon, Ju= l 10, 2017 at 5:37 PM, Fulton, Ben <span dir=3D"ltr"><<a href=3D"mailto:= [email protected]" target=3D"_blank">[email protected]</a>></span> wrote:<br= ><blockquote class=3D"gmail_quote" style=3D"margin:0 0 0 .8ex;border-left:1= px #ccc solid;padding-left:1ex">Yes, I'll take care of that.<br> <br> --<br> Ben Fulton<br> Research Technologies<br> Scientific Applications and Performance Tuning<br> Indiana University<br> E-Mail: <a href=3D"mailto:[email protected]">[email protected]</a><br> <div><div class=3D"h5"><br> -----Original Message-----<br> From: Biopython-dev [mailto:<a href=3D"mailto:biopython-dev-bounces%2Bbeful= ton">biopython-dev-bounces+<wbr>befulton</a>=3D<a href=3D"mailto:iu.edu@mai= lman.open-bio.org">[email protected]<wbr>bio.org</a>] On Behalf Of Peter= Cock<br> Sent: Monday, July 10, 2017 10:51 AM<br> To: Ben Fulton <<a href=3D"mailto:[email protected]">[email protected]</= a>><br> Cc: Biopython-Dev Mailing List <<a href=3D"mailto:biopython-dev@mailman.= open-bio.org">[email protected]<wbr>bio.org</a>><br> Subject: Re: [Biopython-dev] Biopython 1.70 release<br> <br> Hi Ben,<br> <br> While in the not too distant future I am hoping to adopt the NumPy approach= to building wheels (and installers?) [1], it would be much appreciated if = you could make all the Windows installers for Biopython 1.70.<br> <br> (In particular Python 3.6, but if possible also Python 2.7,<br> 3.4 and 3.5 - we no longer support Python 3.3)<br> <br> Now that we have Windows-based continuous integration up and running on App= Veyor [2], I didn't feel it necessary to bother you in advance about ru= nning the unit tests.<br> <br> Much obliged,<br> <br> Peter<br> <br> [1] <a href=3D"http://mailman.open-bio.org/pipermail/biopython-dev/2017-Jul= y/021817.html" rel=3D"noreferrer" target=3D"_blank">http://mailman.open-bio= .org/<wbr>pipermail/biopython-dev/2017-<wbr>July/021817.html</a><br> <br> [2] <a href=3D"http://mailman.open-bio.org/pipermail/biopython-dev/2017-Jun= e/021797.html" rel=3D"noreferrer" target=3D"_blank">http://mailman.open-bio= .org/<wbr>pipermail/biopython-dev/2017-<wbr>June/021797.html</a><br> <a href=3D"https://ci.appveyor.com/project/biopython/biopython/history" rel= =3D"noreferrer" target=3D"_blank">https://ci.appveyor.com/<wbr>project/biop= ython/biopython/<wbr>history</a><br> <br> <br> On Mon, Jul 10, 2017 at 4:43 PM, Peter Cock <<a href=3D"mailto:p.j.a.coc= [email protected]">[email protected]</a>> wrote:<br> > Hello all,<br> ><br> > I'd like to delay the PyPI upload and official release announcemen= t<br> > until someone else has confirmed they could install this - any volunte= ers?<br> ><br> > <a href=3D"http://biopython.org/DIST/biopython-1.70.tar.gz" rel=3D"nor= eferrer" target=3D"_blank">http://biopython.org/DIST/<wbr>biopython-1.70.ta= r.gz</a><br> > <a href=3D"http://biopython.org/DIST/biopython-1.70.zip" rel=3D"norefe= rrer" target=3D"_blank">http://biopython.org/DIST/<wbr>biopython-1.70.zip</= a><br> > Checksums:<br> ><br> > $ md5sum biopython-1.70.*<br> > feff7a3e2777e43f9b13039b344e06<wbr>ff=C2=A0 biopython-1.70.tar.gz<br> > 6307ab27c257fe69b9dae4bfc3052f<wbr>49=C2=A0 biopython-1.70.zip<br> ><br> > $ sha256sum biopython-1.70.*<br> > 4a7c5298f03d1a45523f32bae1fffc<wbr>ff323ea9dce007fb1241af092f5ab2<wbr>= e45b<br> > biopython-1.70.tar.gz<br> > 34312ce899f6c3fc9dea77ca997f9a<wbr>8c228043d05284a0653577594aeb11<wbr>= 9d4f<br> > biopython-1.70.zip<br> ><br> > These are from this tagged commit on the main repository:<br> ><br> > <a href=3D"https://github.com/biopython/biopython/tree/biopython-170" = rel=3D"noreferrer" target=3D"_blank">https://github.com/biopython/<wbr>biop= ython/tree/biopython-170</a><br> > <a href=3D"https://github.com/biopython/biopython/commit/4d01a84f0aa8f= 91863075f7f" rel=3D"noreferrer" target=3D"_blank">https://github.com/biopyt= hon/<wbr>biopython/commit/<wbr>4d01a84f0aa8f91863075f7f</a><br> > 0f074b4b69e53959<br> ><br> > The revised documentation is already live:<br> ><br> > <a href=3D"http://biopython.org/DIST/docs/api/" rel=3D"noreferrer" tar= get=3D"_blank">http://biopython.org/DIST/<wbr>docs/api/</a><br> > <a href=3D"http://biopython.org/DIST/docs/tutorial/Tutorial.pdf" rel= =3D"noreferrer" target=3D"_blank">http://biopython.org/DIST/<wbr>docs/tutor= ial/Tutorial.pdf</a><br> > <a href=3D"http://biopython.org/DIST/docs/tutorial/Tutorial.html" rel= =3D"noreferrer" target=3D"_blank">http://biopython.org/DIST/<wbr>docs/tutor= ial/Tutorial.html</a><br> > etc<br> ><br> > Peter<br> ><br> > On Mon, Jul 10, 2017 at 2:19 PM, Peter Cock <<a href=3D"mailto:p.j.= [email protected]">[email protected]</a>> wrote:<br> >> Thanks everyone who helped recently with resolving open issues and= <br> >> pull requests - especially Eric who did lots last week.<br> >><br> >> I'm going to try the release this afternoon, so please conside= r the<br> >> mast branch frozen for the time being.<br> >><br> >> Thanks,<br> >><br> >> Peter<br> </div></div>______________________________<wbr>_________________<br> Biopython-dev mailing list<br> <a href=3D"mailto:[email protected]">Biopython-dev@mailman= .open-<wbr>bio.org</a><br> <a href=3D"http://mailman.open-bio.org/mailman/listinfo/biopython-dev" rel= =3D"noreferrer" target=3D"_blank">http://mailman.open-bio.org/<wbr>mailman/= listinfo/biopython-dev</a><br> </blockquote></div><br></div> --94eb2c0764620b4e4b0553f96e69-- --===============0143362712170110333== Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Content-Disposition: inline _______________________________________________ Biopython-dev mailing list [email protected] http://mailman.open-bio.org/mailman/listinfo/biopython-dev --===============0143362712170110333==--