Re: Biopython 1.70 release
Peter Cock <[email protected]> Mon, 10 Jul 2017 17:56:25 +0100
| Newsgroups | gmane.comp.python.bio.devel |
|---|---|
| Message-ID | <CAKVJ-_5OqgRA1E8sMjPEgSBGe+wk3_j6CD12tWW7jt89bXMXdg@mail.gmail.com> |
--===============7707665887612074089== Content-Type: multipart/alternative; boundary="089e08223c5c9ed2bf0553f97645" --089e08223c5c9ed2bf0553f97645 Content-Type: text/plain; charset="UTF-8" Thanks for the offer Sourav, but Ben Fulton is happy to do the Windows installers again for Biopython 1.70. It would however be great if you could download the zip file (or tar-ball), and attempt to installing it from source and run the tests (on Windows, Linux or Mac). e.g. wget http://biopython.org/DIST/biopython-1.70.zip unzip biopython-1.70.zip cd biopython-1.70 pip install . cd Tests python run_tests.py Thanks, Peter On Mon, Jul 10, 2017 at 5:47 PM, Sourav Singh <[email protected]> wrote: > Hello, > > I can help with the testing of the gzipped code and creation of Windows > installers for Biopython 1.70. > > Regards, > > Sourav > > On Jul 10, 2017 9:59 PM, "Peter Cock" <[email protected]> wrote: > >> Hi Ben, >> >> While in the not too distant future I am hoping to adopt the >> NumPy approach to building wheels (and installers?) [1], >> it would be much appreciated if you could make all the >> Windows installers for Biopython 1.70. >> >> (In particular Python 3.6, but if possible also Python 2.7, >> 3.4 and 3.5 - we no longer support Python 3.3) >> >> Now that we have Windows-based continuous integration >> up and running on AppVeyor [2], I didn't feel it necessary >> to bother you in advance about running the unit tests. >> >> Much obliged, >> >> Peter >> >> [1] http://mailman.open-bio.org/pipermail/biopython-dev/2017-Jul >> y/021817.html >> >> [2] http://mailman.open-bio.org/pipermail/biopython-dev/2017-Jun >> e/021797.html >> https://ci.appveyor.com/project/biopython/biopython/history >> >> >> On Mon, Jul 10, 2017 at 4:43 PM, Peter Cock <[email protected]> >> wrote: >> > Hello all, >> > >> > I'd like to delay the PyPI upload and official release announcement >> until >> > someone else has confirmed they could install this - any volunteers? >> > >> > http://biopython.org/DIST/biopython-1.70.tar.gz >> > http://biopython.org/DIST/biopython-1.70.zip >> > Checksums: >> > >> > $ md5sum biopython-1.70.* >> > feff7a3e2777e43f9b13039b344e06ff biopython-1.70.tar.gz >> > 6307ab27c257fe69b9dae4bfc3052f49 biopython-1.70.zip >> > >> > $ sha256sum biopython-1.70.* >> > 4a7c5298f03d1a45523f32bae1fffcff323ea9dce007fb1241af092f5ab2e45b >> > biopython-1.70.tar.gz >> > 34312ce899f6c3fc9dea77ca997f9a8c228043d05284a0653577594aeb119d4f >> > biopython-1.70.zip >> > >> > These are from this tagged commit on the main repository: >> > >> > https://github.com/biopython/biopython/tree/biopython-170 >> > https://github.com/biopython/biopython/commit/4d01a84f0aa8f9 >> 1863075f7f0f074b4b69e53959 >> > >> > The revised documentation is already live: >> > >> > http://biopython.org/DIST/docs/api/ >> > http://biopython.org/DIST/docs/tutorial/Tutorial.pdf >> > http://biopython.org/DIST/docs/tutorial/Tutorial.html >> > etc >> > >> > Peter >> > >> > On Mon, Jul 10, 2017 at 2:19 PM, Peter Cock <[email protected]> >> wrote: >> >> Thanks everyone who helped recently with resolving >> >> open issues and pull requests - especially Eric who >> >> did lots last week. >> >> >> >> I'm going to try the release this afternoon, so please >> >> consider the mast branch frozen for the time being. >> >> >> >> Thanks, >> >> >> >> Peter >> _______________________________________________ >> Biopython-dev mailing list >> [email protected] >> http://mailman.open-bio.org/mailman/listinfo/biopython-dev >> > --089e08223c5c9ed2bf0553f97645 Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable <div dir=3D"ltr">Thanks for the offer Sourav, but Ben Fulton is happy to do= <div>the Windows installers again for Biopython 1.70.</div><div><br></div><= div>It would however be great if you could download the zip file</div><div>= (or tar-ball), and attempt to installing it from source and run</div><div>t= he tests (on Windows, Linux or Mac).</div><div><br></div><div>e.g.</div><di= v><br></div><div>wget=C2=A0<a href=3D"http://biopython.org/DIST/biopython-1= .70.zip">http://biopython.org/DIST/biopython-1.70.zip</a></div><div>unzip b= iopython-1.70.zip</div><div>cd biopython-1.70</div><div>pip install .</div>= <div>cd Tests</div><div>python run_tests.py</div><div><br></div><div>Thanks= ,</div><div><br></div><div>Peter</div></div><div class=3D"gmail_extra"><br>= <div class=3D"gmail_quote">On Mon, Jul 10, 2017 at 5:47 PM, Sourav Singh <s= pan dir=3D"ltr"><<a href=3D"mailto:[email protected]" target=3D"_= blank">[email protected]</a>></span> wrote:<br><blockquote class= =3D"gmail_quote" style=3D"margin:0 0 0 .8ex;border-left:1px #ccc solid;padd= ing-left:1ex"><div dir=3D"auto">Hello,<div dir=3D"auto"><br></div><div dir= =3D"auto">I can help with the testing of the gzipped code and creation of W= indows installers for Biopython 1.70.</div><div dir=3D"auto"><br></div><div= dir=3D"auto">Regards,</div><div dir=3D"auto"><br></div><div dir=3D"auto">S= ourav</div></div><div class=3D"gmail_extra"><br><div class=3D"gmail_quote">= <div><div class=3D"h5">On Jul 10, 2017 9:59 PM, "Peter Cock" <= <a href=3D"mailto:[email protected]" target=3D"_blank">p.j.a.cock@g= ooglemail.com</a>> wrote:<br type=3D"attribution"></div></div><blockquot= e class=3D"gmail_quote" style=3D"margin:0 0 0 .8ex;border-left:1px #ccc sol= id;padding-left:1ex"><div><div class=3D"h5">Hi Ben,<br> <br> While in the not too distant future I am hoping to adopt the<br> NumPy approach to building wheels (and installers?) [1],<br> it would be much appreciated if you could make all the<br> Windows installers for Biopython 1.70.<br> <br> (In particular Python 3.6, but if possible also Python 2.7,<br> 3.4 and 3.5 - we no longer support Python 3.3)<br> <br> Now that we have Windows-based continuous integration<br> up and running on AppVeyor [2], I didn't feel it necessary<br> to bother you in advance about running the unit tests.<br> <br> Much obliged,<br> <br> Peter<br> <br> [1] <a href=3D"http://mailman.open-bio.org/pipermail/biopython-dev/2017-Jul= y/021817.html" rel=3D"noreferrer" target=3D"_blank">http://mailman.open-bio= .org/pi<wbr>permail/biopython-dev/2017-Jul<wbr>y/021817.html</a><br> <br> [2] <a href=3D"http://mailman.open-bio.org/pipermail/biopython-dev/2017-Jun= e/021797.html" rel=3D"noreferrer" target=3D"_blank">http://mailman.open-bio= .org/pi<wbr>permail/biopython-dev/2017-Jun<wbr>e/021797.html</a><br> <a href=3D"https://ci.appveyor.com/project/biopython/biopython/history" rel= =3D"noreferrer" target=3D"_blank">https://ci.appveyor.com/projec<wbr>t/biop= ython/biopython/history</a><br> <br> <br> On Mon, Jul 10, 2017 at 4:43 PM, Peter Cock <<a href=3D"mailto:p.j.a.coc= [email protected]" target=3D"_blank">[email protected]</a>> wrote= :<br> > Hello all,<br> ><br> > I'd like to delay the PyPI upload and official release announcemen= t until<br> > someone else has confirmed they could install this - any volunteers?<b= r> ><br> > <a href=3D"http://biopython.org/DIST/biopython-1.70.tar.gz" rel=3D"nor= eferrer" target=3D"_blank">http://biopython.org/DIST/biop<wbr>ython-1.70.ta= r.gz</a><br> > <a href=3D"http://biopython.org/DIST/biopython-1.70.zip" rel=3D"norefe= rrer" target=3D"_blank">http://biopython.org/DIST/biop<wbr>ython-1.70.zip</= a><br> > Checksums:<br> ><br> > $ md5sum biopython-1.70.*<br> > feff7a3e2777e43f9b13039b344e06<wbr>ff=C2=A0 biopython-1.70.tar.gz<br> > 6307ab27c257fe69b9dae4bfc3052f<wbr>49=C2=A0 biopython-1.70.zip<br> ><br> > $ sha256sum biopython-1.70.*<br> > 4a7c5298f03d1a45523f32bae1fffc<wbr>ff323ea9dce007fb1241af092f5ab2<wbr>= e45b<br> > biopython-1.70.tar.gz<br> > 34312ce899f6c3fc9dea77ca997f9a<wbr>8c228043d05284a0653577594aeb11<wbr>= 9d4f<br> > biopython-1.70.zip<br> ><br> > These are from this tagged commit on the main repository:<br> ><br> > <a href=3D"https://github.com/biopython/biopython/tree/biopython-170" = rel=3D"noreferrer" target=3D"_blank">https://github.com/biopython/b<wbr>iop= ython/tree/biopython-170</a><br> > <a href=3D"https://github.com/biopython/biopython/commit/4d01a84f0aa8f= 91863075f7f0f074b4b69e53959" rel=3D"noreferrer" target=3D"_blank">https://g= ithub.com/biopython/b<wbr>iopython/commit/4d01a84f0aa8f9<wbr>1863075f7f0f07= 4b4b69e53959</a><br> ><br> > The revised documentation is already live:<br> ><br> > <a href=3D"http://biopython.org/DIST/docs/api/" rel=3D"noreferrer" tar= get=3D"_blank">http://biopython.org/DIST/docs<wbr>/api/</a><br> > <a href=3D"http://biopython.org/DIST/docs/tutorial/Tutorial.pdf" rel= =3D"noreferrer" target=3D"_blank">http://biopython.org/DIST/docs<wbr>/tutor= ial/Tutorial.pdf</a><br> > <a href=3D"http://biopython.org/DIST/docs/tutorial/Tutorial.html" rel= =3D"noreferrer" target=3D"_blank">http://biopython.org/DIST/docs<wbr>/tutor= ial/Tutorial.html</a><br> > etc<br> ><br> > Peter<br> ><br> > On Mon, Jul 10, 2017 at 2:19 PM, Peter Cock <<a href=3D"mailto:p.j.= [email protected]" target=3D"_blank">[email protected]</a>> = wrote:<br> >> Thanks everyone who helped recently with resolving<br> >> open issues and pull requests - especially Eric who<br> >> did lots last week.<br> >><br> >> I'm going to try the release this afternoon, so please<br> >> consider the mast branch frozen for the time being.<br> >><br> >> Thanks,<br> >><br> >> Peter<br></div></div><span class=3D""> ______________________________<wbr>_________________<br> Biopython-dev mailing list<br> <a href=3D"mailto:[email protected]" target=3D"_blank">Bio= [email protected]<wbr>.org</a><br> <a href=3D"http://mailman.open-bio.org/mailman/listinfo/biopython-dev" rel= =3D"noreferrer" target=3D"_blank">http://mailman.open-bio.org/ma<wbr>ilman/= listinfo/biopython-dev</a><br> </span></blockquote></div></div> </blockquote></div><br></div> --089e08223c5c9ed2bf0553f97645-- --===============7707665887612074089== Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Content-Disposition: inline _______________________________________________ Biopython-dev mailing list [email protected] http://mailman.open-bio.org/mailman/listinfo/biopython-dev --===============7707665887612074089==--