[Biopython] HiC - extracting scaffold names from a contact matrix
Mic <[email protected]>
| Newsgroups | gmane.comp.python.bio.general |
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| Message-ID | <CAOP6n=i7H1c3OjebRj1dO4jzsFxFhpVv65r-fdL1Z1NhnysWMA@mail.gmail.com> |
Hello, I ran 3d-dna and ALLHiC. Both of them showing in JuiceBox ( https://www.youtube.com/watch?v=Nj7RhQZHM18 ) different chromosome size bins (blue). Is there a way to extract scaffold names (green box ) inside each blue box as shown here ( https://imgur.com/a/izTbb54 ) ? Thank you in advance Mic _______________________________________________ Biopython mailing list - [email protected] http://mailman.open-bio.org/mailman/listinfo/biopython