Re: [Biopython] HiC - extracting scaffold names from a contact matrix
Peter Cock <[email protected]>
| Newsgroups | gmane.comp.python.bio.general |
|---|---|
| Message-ID | <CAKVJ-_5X=VOK5VDLebEOTn0hQ-p7wfvpdO6_nq06FJvEjQTCKA@mail.gmail.com> |
Hello Mic, I don't understand you question and how it relates to Biopython. Do you mean starting from the output of 3d-dna and/or ALLHiC, how to match scaffold names to the diagonal entries (green boxes)? Peter On Fri, Jan 11, 2019 at 4:02 AM Mic <[email protected]> wrote: > > Hello, > I ran 3d-dna and ALLHiC. Both of them showing in JuiceBox ( https://www.youtube.com/watch?v=Nj7RhQZHM18 ) different chromosome size bins (blue). Is there a way to extract scaffold names (green box ) inside each blue box as shown here ( https://imgur.com/a/izTbb54 ) ? > > Thank you in advance > > Mic > > > _______________________________________________ > Biopython mailing list - [email protected] > http://mailman.open-bio.org/mailman/listinfo/biopython _______________________________________________ Biopython mailing list - [email protected] http://mailman.open-bio.org/mailman/listinfo/biopython