Re: [Biopython] Fwd: Your abstract (11) has been accepted for a short talk at BOSC 2020!

Hello all,

Unfortunately I missed the official window to update the abstract, too much
going on with COVID-19 lockdown etc. But I could ask the rest of the
committee nicely?

Right now though, I need to finish the slides this weekend ready to submit
a recorded video version on Monday 6 July. The most practical way to do
that seems to be with Microsoft Powerpoint (I know how to record audio for
each slide, do the timings, and export a video).

If you want to see the current draft, please email me (off list is fine).
I'll send a copy directly now to a few people whose work is specifically
mentioned,

Thanks all,

Peter

On Sat, Jun 13, 2020 at 6:10 AM Michiel de Hoon <[email protected]> wrote:

> For novel functionality (see the first reviewer) you could point to the
> new pairwise sequence aligner in Biopython. It is as fast as aligners
> implemented as standalone (C/C++) programs, maybe even faster if you want
> to align many sequences, but much more flexible. I don't know of any
> existing programs that offer this speed and flexibility.
>
> Best,
> -Michiel
>
> On Sunday, June 7, 2020, 9:16:22 PM GMT+9, Peter Cock <
> [email protected]> wrote:
>
> Good news: The abstract was accepted for a lightning talk, and we have the
> opportunity to improve the abstract (see reviews below).
>
> Specifically I think we should add something about the alphabet changes
> underway on GitHub (which in hindsight I wish we'd drawn more attention to
> in the NEWS file for Biopython 1.78). Quoting the DEPRECATED file,
>
> "The design of Bio.Aphabet included a number of historic design choices
> which, with the benefit of hindsight, were regretable. While the details
> remain to be agreed, we intend to remove or replace Bio.Alphabet in 2020."
>
> GMail has just flagged that regrettable was misspelt. Opps.
>
> The BOSC/BCC 20202 abstract is here:
>
> https://github.com/biopython/talks/tree/master/2020_BOSC/abstract
>
> Peter
>
>

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