Re: [Biopython] Error with DSSP module
Peter Cock <[email protected]> Tue, 13 Apr 2021 14:57:36 +0100
| Newsgroups | gmane.comp.python.bio.general |
|---|---|
| Message-ID | <CAKVJ-_594bcTk5yBRL_T5PfgBL2Vs2FCkW_iNC2J4bjpmSUs1A@mail.gmail.com> |
Which version of DSSP are you using? See: https://github.com/biopython/biopython/issues/3433 Peter On Tue, Apr 13, 2021 at 2:51 PM Hrishikesh Dhondge <[email protected]> wrote: > > Hello everyone, > I'm facing a problem with the DSSP module in Biopython. I am trying to compute solvent accessible surface area from the PDB file. > I used the same block of code as given in the biopython wiki: > > https://biopython.org/docs/1.78/api/Bio.PDB.DSSP.html?highlight=dssp#module-Bio.PDB.DSSP > > But after running it returns nothing and gives the following error: > > a_key = list(dssp.keys())[2] > IndexError: list index out of range > > Any suggestions would be appreciated. Thanks in advance! > > -- > With regards > Hrishikesh Dhondge > > _______________________________________________ > Biopython mailing list - [email protected] > https://mailman.open-bio.org/mailman/listinfo/biopython _______________________________________________ Biopython mailing list - [email protected] https://mailman.open-bio.org/mailman/listinfo/biopython