[Biopython] PARS - pfam module for biopython
Julia Gołębiowska <[email protected]> Tue, 15 Jun 2021 20:07:21 +0200
| Newsgroups | gmane.comp.python.bio.general |
|---|---|
| Message-ID | <CAGw9nsk-HKK5zqy06Jy+fkEwWiAaFDT3OWuqudDCCUjbzBCdBg@mail.gmail.com> |
Dear Sir/Madam, We want to contribute to biopython with our PARS package. As there is no module in Biopython devoted to Pfam database we created a package for this purpose. PARS enables downloading files from Pfam and Rfam databases with additional wrappers for HAMMER tools - hmmsearch, hmmscan and hmmpress which enables the usage of downloaded hmm files. We wrote classes dedicated to Pfam families/clans and hmm flat files. Our package enables easy switching between the Pfam and other popular databases by translation of accession numbers. To see code please visit: https://github.com/JuliaGol/PARS, to see documentation and examples: https://github.com/JuliaGol/PARS/wiki. I hope you consider our code. Sincerely, Adam Cicherski Julia Gołębiowska Patrycja Owczarek _______________________________________________ Biopython mailing list - [email protected] https://mailman.open-bio.org/mailman/listinfo/biopython