Re: [Biopython] PARS - pfam module for biopython

This could be useful for anyone working with the Pfam HMM files. Would
anyone on the mailing list be keen to try this?

I suggest in the short term you add a link to it from here:

https://biopython.org/wiki/Scriptcentral

Thank you,

Peter

On Tue, Jun 15, 2021 at 7:07 PM Julia Gołębiowska
<[email protected]> wrote:
>
> Dear Sir/Madam,
>
> We want to contribute to biopython with our PARS package. As there is no module in Biopython devoted to Pfam database we created a package for this purpose. PARS enables downloading files from Pfam and Rfam databases with additional wrappers for HAMMER tools - hmmsearch, hmmscan and hmmpress which enables the usage of downloaded hmm files. We wrote classes dedicated to Pfam families/clans and hmm flat files. Our package enables easy switching between the Pfam and other popular databases by translation of accession numbers.
>
> To see code please visit: https://github.com/JuliaGol/PARS, to see documentation and  examples: https://github.com/JuliaGol/PARS/wiki.
>
>  I hope you consider our code.
>
> Sincerely,
> Adam Cicherski
> Julia Gołębiowska
> Patrycja Owczarek
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