Re: ClonalFrameML: Dataset with less computational resourses
Komolehin Israel <[email protected]>
| Newsgroups | gmane.linux.debian.devel.medical |
|---|---|
| Message-ID | <CANBha2ucKpT55eq6wo+n5fw2uJQFv0Mcm_p6eVOHp0BD-RK9Sg@mail.gmail.com> |
Hi Xavier, > Thanks, I have just added this test dataset to the github repository. > Best wishes, > Xavier Thank you very much. Best regards, Israel On Wed, Jan 31, 2024 at 1:17 PM Xavier Didelot <[email protected]> wrote: > Hi Israel, > > Thanks, I have just added this test dataset to the github repository. > > Best wishes, > Xavier > > On Mon, 29 Jan 2024 at 17:35, Komolehin Israel <[email protected]> > wrote: > >> Hi Xavier, >> >> > The license is the same as for ClonalFrameML itself, ie GPL-3.0. >> Great. Thank you. >> >> > Would it be useful for you if I added these files to the github >> repository? >> >> Yes. That would be great. >> >> Thank you for your feedback Xavier. >> Regards, >> Israel. >> >> >> On Mon, Jan 29, 2024 at 6:29 PM Xavier Didelot <[email protected]> >> wrote: >> >>> Hi Israel, >>> >>> The license is the same as for ClonalFrameML itself, ie GPL-3.0. >>> Would it be useful for you if I added these files to the github >>> repository? >>> >>> Best wishes, >>> Xavier >>> >>> On Mon, 29 Jan 2024 at 16:24, Komolehin Israel < >>> [email protected]> wrote: >>> >>>> Hi Xavier, >>>> >>>> Thank you for your feedback. This worked pretty well. >>>> Could you please help provide us with the licensing information for >>>> these dataset ? >>>> >>>> Regards, >>>> Israel. >>>> >>>> On Mon, Jan 29, 2024 at 12:59 PM Xavier Didelot < >>>> [email protected]> wrote: >>>> >>>>> Hi Israel, >>>>> >>>>> Cf attached files test.fasta and test.nwk >>>>> The command >>>>> ClonalFrameML test.nwk test.fasta out >>>>> will take less than a second to run. >>>>> >>>>> Best wishes, >>>>> Xavier >>>>> >>>>> On Mon, 29 Jan 2024 at 10:20, Komolehin Israel < >>>>> [email protected]> wrote: >>>>> >>>>>> Hi Xavier, >>>>>> >>>>>> I hope this email finds you well. I'm currently involved in QA >>>>>> testing for med-team packages, including ClonalFrameML. We've encountered a >>>>>> challenge with the dataset provided upstream, which requires around 12 >>>>>> hours of computing. >>>>>> >>>>>> To streamline our testing process, would it be possible to provide a >>>>>> lightweight dataset that demands less computing power? Your assistance in >>>>>> this matter would significantly aid our testing efforts. >>>>>> >>>>>> Thank you for your help. >>>>>> >>>>>> Best regards, >>>>>> Israel >>>>>> >>>>>