Re: Upgrade of sra-sdk

Andreas Tille <[email protected]> writes:

> while trying to fix bug #1087096 (Python SyntaxWarning) I realised there
> is a new upstream version of sra-sdk.  I somehow got cmake passing after
> adapting some patches

Thanks!

> In case this might be relevant:  I just uploaded ncbi-vdb 3.1.1 to
> experimental - so if this might be helpful its there.

Building sra-sdk 3.1.1 against ncbi-vdb 3.1.1 does in fact help a lot
(no surprise -- releases are generally issued in lockstep and intended
to be used together).  However, it will evidently also be necessary to
extend support_libre2-11.patch to cover recent additions to
fasta_defline_matcher.hpp.  I'll take a closer look when I get a chance.