FTBFS https://salsa.debian.org/r-pkg-team/r-bioc-h5mread/
Steffen Möller <[email protected]>
| Newsgroups | gmane.linux.debian.devel.medical |
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Hello, This is a new dependency for r-bioc-hdf5array - should anyone of your's have the leisure. x86_64-linux-gnu-gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rhdf5lib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -fpi c -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.6.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf -protection -Wdate-time -D_FORTIFY_SOURCE=2 -c TouchedChunks.c -o TouchedChunks.o In file included from /usr/lib/R/site-library/Rhdf5lib/include/H5public.h:23, from /usr/lib/R/site-library/Rhdf5lib/include/hdf5.h:21, from H5DSetDescriptor.h:15, from TouchedChunks.h:4, from TouchedChunks.c:7: TouchedChunks.c: In function ‘read_h5chunk’: /usr/lib/R/site-library/Rhdf5lib/include/H5version.h:1146:25: error: too few arguments to function ‘H5Dread_chunk2’; expected 6, have 5 1146 | #define H5Dread_chunk H5Dread_chunk2 | ^~~~~~~~~~~~~~ TouchedChunks.c:320:15: note: in expansion of macro ‘H5Dread_chunk’ 320 | ret = H5Dread_chunk(dset_id, H5P_DEFAULT, | ^~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/Rhdf5lib/include/hdf5.h:24: /usr/lib/R/site-library/Rhdf5lib/include/H5Dpublic.h:1320:15: note: declared here 1320 | H5_DLL herr_t H5Dread_chunk2(hid_t dset_id, hid_t dxpl_id, const hsize_t *offset, uint32_t *filters, | ^~~~~~~~~~~~~~ make[1]: *** [/usr/lib/R/etc/Makeconf:190: TouchedChunks.o] Fehler 1 make[1]: Verzeichnis „/home/moeller/CRAN_prospective/r-bioc-h5mread/src“ wird verlassen make[1]: Verzeichnis „/home/moeller/CRAN_prospective/r-bioc-h5mread/src“ wird betreten make[1]: Verzeichnis „/home/moeller/CRAN_prospective/r-bioc-h5mread/src“ wird verlassen ERROR: compilation failed for package ‘h5mread’ I don't see it :-) Many thanks! Steffen