Re: Bug#1136915: [help] bioperl: FTBFS: Failed 26/211 test programs. 1/11707 subtests failed.
Étienne Mollier <[email protected]> Sun, 21 Jun 2026 22:38:20 +0200
| Newsgroups | gmane.linux.debian.devel.perl |
|---|---|
| Message-ID | <[email protected]> |
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After further investigations, this:
> t/Ontology/OntologyEngine.t .. 1/31 Undefined subroutine &main::throws_o=
k called at t/Ontology/OntologyEngine.t line 117.
and friends looks to stem from Bio::Root::Test not reexporting
Test::Most submodules anymore. I'm not entirely sure whether
the bug is in bioperl or Test::Most, but fixing the issue from
bioperl is manageable, by patching lib/Bio/Root/Test.pm:
-8<-------------------------------------------------------------
--- bioperl.orig/lib/Bio/Root/Test.pm
+++ bioperl/lib/Bio/Root/Test.pm
@@ -150,6 +150,12 @@
=20
our @EXPORT =3D (
@Test::Most::EXPORT,
+ @Test::More::EXPORT,
+ @Test::Exception::EXPORT,
+ @Test::Warn::EXPORT,
+ @Test::Deep::EXPORT,
+ @Test::Diff::EXPORT,
+ @Test::Differences::EXPORT,
=20
#@Bio::Root::Test::Warn::EXPORT,
# Test::Warn method wrappers
-8<-------------------------------------------------------------
I will proceed with the package upload tonight.
Have a nice day, :)
--=20
.''`. =C3=89tienne Mollier <[email protected]>
: :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da
`. `' sent from /dev/pts/3, please excuse my verbosity
`-
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