Re: Bug#1136915: [help] bioperl: FTBFS: Failed 26/211 test programs. 1/11707 subtests failed.

Dominique Dumont <[email protected]> Mon, 22 Jun 2026 20:03:49 +0200
Newsgroups gmane.linux.debian.devel.perl
Message-ID <2758015.k3LOHGUjKi@ylum>
--nextPart2203717.bB369e8A3T
Content-Transfer-Encoding: quoted-printable
Content-Type: text/plain; charset="utf-8"; protected-headers="v1"
From: Dominique Dumont <[email protected]>
To: [email protected]
Date: Mon, 22 Jun 2026 20:03:49 +0200
Message-ID: <2758015.k3LOHGUjKi@ylum>
In-Reply-To: <[email protected]>
MIME-Version: 1.0

On Sunday, 21 June 2026 22:38:20 Central European Summer Time =C3=89tienne =
Mollier=20
wrote:
> After further investigations, this:
> >        t/Ontology/OntologyEngine.t .. 1/31 Undefined subroutine
> >        &main::throws_ok called at t/Ontology/OntologyEngine.t line 117.
> and friends looks to stem from Bio::Root::Test not reexporting
> Test::Most submodules anymore.  I'm not entirely sure whether
> the bug is in bioperl or Test::Most, but fixing the issue from
> bioperl is manageable, by patching lib/Bio/Root/Test.pm

I don't recommend reexporting functions route as this makes harder to know=
=20
where the test functions come from.

All the best

--nextPart2203717.bB369e8A3T
Content-Type: application/pgp-signature; name="signature.asc"
Content-Description: This is a digitally signed message part.
Content-Transfer-Encoding: 7Bit

-----BEGIN PGP SIGNATURE-----
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=1oqg
-----END PGP SIGNATURE-----

--nextPart2203717.bB369e8A3T--