Re: Failed: phase compiling: r-base34-3.4.4-1 failed

Hanspeter Niederstrasser <[email protected]>
Newsgroups gmane.os.apple.fink.beginners
Organization Snaggled Works
Message-ID <[email protected]>
On 11/9/19 2:29 PM, Robert Wyatt wrote:
> Just to add a data point, yes, it still fails with the current CLI tools 
> (although I didn't try it with the Beta version... would you like me to?):
> 
> - checking for Xcode version... 11.2
> - checking for Xcode CLI tools version... 11.2.0.0.1.1571444319
> 
> Package manager version: 0.45.0
> Distribution version: selfupdate-git Fri Nov  8 12:27:10 2019, 10.14.5, 
> x86_64
> 
> * My machine is a: uname -m; sysctl hw.model; sysctl 
> machdep.cpu.brand_string
> x86_64
> hw.model: Macmini6,2
> machdep.cpu.brand_string: Intel(R) Core(TM) i7-3615QM CPU @ 2.30GHz
> 
> installing 'sysdata.rda'
> dyld: lazy symbol binding failed: Symbol not found: _timespec_get
>    Referenced from: 
> /sw/src/fink.build/r-base35-3.5.3-1/R-3.5.3/lib/libR.dylib
>    Expected in: /usr/lib/libSystem.B.dylib
> 
> dyld: Symbol not found: _timespec_get
>    Referenced from: 
> /sw/src/fink.build/r-base35-3.5.3-1/R-3.5.3/lib/libR.dylib
>    Expected in: /usr/lib/libSystem.B.dylib
> 
> /bin/sh: line 1: 49712 Done                    echo 
> "tools:::sysdata2LazyLoadDB(\"./R/sysdata.rda\",\"../../../library/tools/R\")" 
> 
>       49713 Abort trap: 6           | R_DEFAULT_PACKAGES=NULL LC_ALL=C 
> R_ENABLE_JIT=0 TZ=UTC ../../../bin/R --vanilla --slave
> make[4]: *** [sysdata] Error 134

Ugh. According to these:
https://github.com/edenhill/librdkafka/pull/2569
https://github.com/confluentinc/confluent-kafka-go/issues/383
https://stackoverflow.com/questions/58386099/macos-throwing-dyld-error-when-running-kafkacat

the problem seems to be with Xcode11 with the 10.15 SDK (which can get 
installed even on 10.14). Sorry I made you update Xcode.

Do r-base35 or r-base36 work there?

@babayoshihiko: This might be another reason to dist restrict the older 
r-base packages from 10.15 (and maybe even 10.14 with Xcode11)?

Hanspeter


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