Re: Update Stuck on hdf5-cpp.100

> The hdf5 packages have a confusing relationship with each other and that
> sometimes confuses the dependency process. Try manually installing just
> the `netcdf-c11 netcdf-c11-shlibs` packages first, then try `fink
> install update-all` again.

This didn't immediately do the trick.  But, I saw that it was then
trying to install netcdf-c15, so I manually installed it (after
running the requested apt-get commands).  Once that finished, though,
"fink update-all" was able to do the rest.  I'm fully up-to-date now.

Thanks,
Daren


On Tue, Jan 28, 2020 at 8:32 PM Hanspeter Niederstrasser
<[email protected]> wrote:
>
> On 1/28/20 9:52 AM, Daren Stotler via Fink-beginners wrote:
> > Yesterday I began a large fink update that is now stuck on some
> > problem with hdf5-cpp.100.
> >
> > "fink update-all" gives:
> >
> > ----------------------------------------
> > Information about 14928 packages read in 1 seconds.
> > The following 7 packages will be installed or updated:
> >   netcdf-bin netcdf-c11 netcdf-c11-shlibs netcdf-fortran7
> > netcdf-fortran7-shlibs texlive-nox
> >   texlive-nox-base
> > The following 4 additional packages will be installed:
> >   hdf5-cpp11 hdf5.10 netcdf-c15 netcdf-c15-shlibs
> > The following package might be temporarily removed:
> >   lua53-dev
> > Default answer will be chosen in 60 seconds...
> > Do you want to continue? [Y/n]
> > Reading buildlock packages...
> > /sw/bin/dpkg-lockwait -i
> > /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/hdf5-cpp11_1.8.16-6_darwin-x86_64.deb
> > /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/hdf5.10_1.8.16-6_darwin-x86_64.deb
> > Selecting previously deselected package hdf5-cpp11.
> > dpkg: considering removing hdf5-cpp.100.v1.10 in favour of hdf5-cpp11 ...
> > dpkg: yes, will remove hdf5-cpp.100.v1.10 in favour of hdf5-cpp11.
> > (Reading database ... 194713 files and directories currently installed.)
> > Unpacking hdf5-cpp11 (from .../hdf5-cpp11_1.8.16-6_darwin-x86_64.deb) ...
> > Selecting previously deselected package hdf5.10.
> > dpkg: considering removing hdf5.100.v1.10 in favour of hdf5.10 ...
> > dpkg: yes, will remove hdf5.100.v1.10 in favour of hdf5.10.
> > Unpacking hdf5.10 (from .../hdf5.10_1.8.16-6_darwin-x86_64.deb) ...
> > Setting up hdf5-cpp11 (1.8.16-6) ...
> > Clearing dependency_libs of .la files being installed
> >
> > Setting up hdf5.10 (1.8.16-6) ...
> > Clearing dependency_libs of .la files being installed
> >
> > Reading buildlock packages...
> > /sw/bin/dpkg-lockwait -i
> > /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/hdf5.100.v1.10_1.10.0-4_darwin-x86_64.deb
> > Selecting previously deselected package hdf5.100.v1.10.
> > dpkg: considering removing hdf5.10 in favour of hdf5.100.v1.10 ...
> > dpkg: yes, will remove hdf5.10 in favour of hdf5.100.v1.10.
> > (Reading database ... 194703 files and directories currently installed.)
> > Unpacking hdf5.100.v1.10 (from
> > .../hdf5.100.v1.10_1.10.0-4_darwin-x86_64.deb) ...
> > Setting up hdf5.100.v1.10 (1.10.0-4) ...
> > Clearing dependency_libs of .la files being installed
> >
> > Reading buildlock packages...
> > Could not resolve inconsistent dependencies!
> >
> > Fink isn't sure how to install the above packages safely. You may be
> > able to fix things by running:
> >
> >    fink scanpackages
> >    sudo apt-get update
> >    sudo apt-get install hdf5-cpp.100.v1.10=1.10.0-4
> >
> > Failed: Fink::SysState: Could not resolve inconsistent dependencies
>

>
> Hanspeter



-- 
_______________________________________________________________
Daren Stotler
Senior Physicist
http://w3.pppl.gov/~dstotler
609-243-2063
Princeton Plasma Physics Laboratory
MS 27
P.O. Box 451
Princeton, NJ 08543


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