Re: Compilation failure for openblas-0.3.7-1 under OSX 10.11.6

David Neuhaus <[email protected]>
Newsgroups gmane.os.apple.fink.beginners
Message-ID <[email protected]> 
Hi Derek,

   Still no success, I'm afraid.  I installed libomp-dev (that was a slow process) and re-ran "update all" (openblas and openblas-shlibs are the only updates), but this failed again with what looks to me like the original symptoms.  I append the last lines of output.

Best wishes,
David Neuhaus.


ranlib ../../../libopenblas.0.a
make[1]: warning: -jN forced in submake: disabling jobserver mode.
perl ./gensymbol osx x86_64 _ 1 0  0 0 0 0 "" "" 1 > osx.def
gfortran-fsf-9 -O2 -mtune=intel -march=core2 -m128bit-long-double -Wall -frecursive -fno-optimize-sibling-calls -m64 -fPIC -L/sw/lib -all_load -headerpad_max_install_names -install_name "/sw/src/fink.build/openblas-0.3.8-1/OpenBLAS-0.3.8/exports/../libopenblas.0.dylib" -dynamiclib -o ../libopenblas.0.dylib ../libopenblas.0.a -Wl,-exported_symbols_list,osx.def  -L/sw/lib/gcc9/lib/gcc/x86_64-apple-darwin15.6.0/9.2.0 -L/sw/lib/gcc9/lib/gcc/x86_64-apple-darwin15.6.0/9.2.0/../../.. -L/sw/lib/gcc9/lib/gcc/x86_64-apple-darwin15.6.0/9.2.0 -L/sw/lib/gcc9/lib/gcc/x86_64-apple-darwin15.6.0/9.2.0/../../..  -lgfortran -lSystem -lquadmath -lm -lSystem -lgfortran -lSystem -lquadmath -lm -lSystem  
	cd benchmark
	make FC=gfortran-fsf-9 USE_THREAD=1 smallscaling veclib goto
clang -O2 -mtune=intel -march=core2 -DMAX_STACK_ALLOC=2048 -DEXPRECISION -Wall -m64 -DF_INTERFACE_GFORT -fPIC -DNO_AVX512 -DSMP_SERVER -DNO_WARMUP -DMAX_CPU_NUMBER=8 -DMAX_PARALLEL_NUMBER=1 -DVERSION=\"0.3.8\" -DASMNAME=_ -DASMFNAME=__ -DNAME=_ -DCNAME= -DCHAR_NAME=\"_\" -DCHAR_CNAME=\"\" -DNO_AFFINITY -I.. -o smallscaling smallscaling.c ../libopenblas.0.a -lpthread -lgfortran -I/sw/include/libomp -L/sw/lib/gcc9/lib -lgomp -lm -lpthread
clang -O2 -mtune=intel -march=core2 -DMAX_STACK_ALLOC=2048 -DEXPRECISION -Wall -m64 -DF_INTERFACE_GFORT -fPIC -DNO_AVX512 -DSMP_SERVER -DNO_WARMUP -DMAX_CPU_NUMBER=8 -DMAX_PARALLEL_NUMBER=1 -DVERSION=\"0.3.8\" -DASMNAME=_slinpack -DASMFNAME=_slinpack_ -DNAME=slinpack_ -DCNAME=slinpack -DCHAR_NAME=\"slinpack_\" -DCHAR_CNAME=\"slinpack\" -DNO_AFFINITY -I.. -c -UCOMPLEX -UDOUBLE -o slinpack.o linpack.c
clang -O2 -mtune=intel -march=core2 -DMAX_STACK_ALLOC=2048 -DEXPRECISION -Wall -m64 -DF_INTERFACE_GFORT -fPIC -DNO_AVX512 -DSMP_SERVER -DNO_WARMUP -DMAX_CPU_NUMBER=8 -DMAX_PARALLEL_NUMBER=1 -DVERSION=\"0.3.8\" -DASMNAME=_dlinpack -DASMFNAME=_dlinpack_ -DNAME=dlinpack_ -DCNAME=dlinpack -DCHAR_NAME=\"dlinpack_\" -DCHAR_CNAME=\"dlinpack\" -DNO_AFFINITY -I.. -c -UCOMPLEX -DDOUBLE -o dlinpack.o linpack.c
clang -O2 -mtune=intel -march=core2 -DMAX_STACK_ALLOC=2048 -DEXPRECISION -Wall -m64 -DF_INTERFACE_GFORT -fPIC -DNO_AVX512 -DSMP_SERVER -DNO_WARMUP -DMAX_CPU_NUMBER=8 -DMAX_PARALLEL_NUMBER=1 -DVERSION=\"0.3.8\" -DASMNAME=_clinpack -DASMFNAME=_clinpack_ -DNAME=clinpack_ -DCNAME=clinpack -DCHAR_NAME=\"clinpack_\" -DCHAR_CNAME=\"clinpack\" -DNO_AFFINITY -I.. -c -DCOMPLEX -UDOUBLE -o clinpack.o linpack.c
clang -O2 -mtune=intel -march=core2 -DMAX_STACK_ALLOC=2048 -DEXPRECISION -Wall -m64 -DF_INTERFACE_GFORT -fPIC -DNO_AVX512 -DSMP_SERVER -DNO_WARMUP -DMAX_CPU_NUMBER=8 -DMAX_PARALLEL_NUMBER=1 -DVERSION=\"0.3.8\" -DASMNAME=_zlinpack -DASMFNAME=_zlinpack_ -DNAME=zlinpack_ -DCNAME=zlinpack -DCHAR_NAME=\"zlinpack_\" -DCHAR_CNAME=\"zlinpack\" -DNO_AFFINITY -I.. -c -DCOMPLEX -DDOUBLE -o zlinpack.o linpack.c
clang -O2 -mtune=intel -march=core2 -DMAX_STACK_ALLOC=2048 -DEXPRECISION -Wall -m64 -DF_INTERFACE_GFORT -fPIC -DNO_AVX512 -DSMP_SERVER -DNO_WARMUP -DMAX_CPU_NUMBER=8 -DMAX_PARALLEL_NUMBER=1 -DVERSION=\"0.3.8\" -DASMNAME=_scholesky -DASMFNAME=_scholesky_ -DNAME=scholesky_ -DCNAME=scholesky -DCHAR_NAME=\"scholesky_\" -DCHAR_CNAME=\"scholesky\" -DNO_AFFINITY -I.. -c -UCOMPLEX -UDOUBLE -o scholesky.o cholesky.c
clang -O2 -mtune=intel -march=core2 -DMAX_STACK_ALLOC=2048 -DEXPRECISION -Wall -m64 -DF_INTERFACE_GFORT -fPIC -DNO_AVX512 -DSMP_SERVER -DNO_WARMUP -DMAX_CPU_NUMBER=8 -DMAX_PARALLEL_NUMBER=1 -DVERSION=\"0.3.8\" -DASMNAME=_dcholesky -DASMFNAME=_dcholesky_ -DNAME=dcholesky_ -DCNAME=dcholesky -DCHAR_NAME=\"dcholesky_\" -DCHAR_CNAME=\"dcholesky\" -DNO_AFFINITY -I.. -c -UCOMPLEX -DDOUBLE -o dcholesky.o cholesky.c
clang -O2 -mtune=intel -march=core2 -DMAX_STACK_ALLOC=2048 -DEXPRECISION -Wall -m64 -DF_INTERFACE_GFORT -fPIC -DNO_AVX512 -DSMP_SERVER -DNO_WARMUP -DMAX_CPU_NUMBER=8 -DMAX_PARALLEL_NUMBER=1 -DVERSION=\"0.3.8\" -DASMNAME=_ccholesky -DASMFNAME=_ccholesky_ -DNAME=ccholesky_ -DCNAME=ccholesky -DCHAR_NAME=\"ccholesky_\" -DCHAR_CNAME=\"ccholesky\" -DNO_AFFINITY -I.. -c -DCOMPLEX -UDOUBLE -o ccholesky.o cholesky.c
smallscaling.c:121:2: warning: implicit declaration of function 'clock_gettime' is invalid in C99 [-Wimplicit-function-declaration]
        clock_gettime(CLOCK_MONOTONIC, &tock);
        ^
smallscaling.c:121:16: error: use of undeclared identifier 'CLOCK_MONOTONIC'
        clock_gettime(CLOCK_MONOTONIC, &tock);
                      ^
smallscaling.c:135:19: error: use of undeclared identifier 'CLOCK_MONOTONIC'
    clock_gettime(CLOCK_MONOTONIC, &tick);
                  ^
smallscaling.c:152:19: error: use of undeclared identifier 'CLOCK_MONOTONIC'
    clock_gettime(CLOCK_MONOTONIC, &tick);
                  ^
smallscaling.c:163:19: error: use of undeclared identifier 'CLOCK_MONOTONIC'
    clock_gettime(CLOCK_MONOTONIC, &tick);
                  ^
1 warning and 4 errors generated.
make: *** [smallscaling] Error 1
make: *** Waiting for unfinished jobs....
### execution of /tmp/fink.DBZiG failed, exit code 2
### execution of /tmp/fink.oqDXr failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-openblas-0.3.8-1
(Reading database ... 201644 files and directories currently installed.)
Removing fink-buildlock-openblas-0.3.8-1 ...
Failed: phase compiling: openblas-0.3.8-1 failed

Before reporting any errors, please run "fink selfupdate" and try again.
Also try using "fink configure" to set your maximum build jobs to 1 and
attempt to build the package again.
If you continue to have issues, please check to see if the FAQ on Fink's 
website solves the problem.  If not, ask on one (not both, please) of
these mailing lists:

	The Fink Users List <[email protected]>
	The Fink Beginners List <[email protected]>,

with a carbon copy to the maintainer:

	Derek Homeier <[email protected]>

Note that this is preferable to emailing just the maintainer directly,
since most fink package maintainers do not have access to all possible
hardware and software configurations.

Please try to include the complete error message in your report.  This
generally consists of a compiler line starting with e.g. "gcc" or "g++"
followed by the actual error output from the compiler.

Also include the following system information:
Package manager version: 0.45.0
Distribution version: selfupdate-git Fri Feb 21 17:49:41 2020, 10.11, x86_64
Trees: local/main stable/main unstable/main
Xcode.app: 8.2.1
Xcode command-line tools: 8.2.0.0.1.1480973914
Max. Fink build jobs:  8


 




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