Re: error on qsub/mpirun jobs
"Rob Hutten" <[email protected]> Mon, 8 Sep 2008 13:00:06 -0300
| Newsgroups | gmane.science.biology.informatics.clusters |
|---|---|
| Message-ID | <[email protected]> |
Hi Zhiliang , Do you have rsa/dsa authentication in both directions, ie can you ssh back to the headnodes from the compute nodes? -Rob On Fri, Sep 5, 2008 at 5:55 PM, Zhiliang Hu <[email protected]> wrote: > I have a a mpiblast job that runs well on command line ("mpirun"). > But have errors when "qsub" to run: > > qsub -l nodes=6:ppn=2 > -e /path/to/locationA > -o /path/to/locationA > /path/to/program > > ---------------------------------------------------------- > Unable to copy file /var/spool/torque/spool/658.nagrp2..ER to > hu@hist:/raid/pub/ncbi/blast/www/mpiblast.tmp >>>> error from copy > Host key verification failed. > lost connection >>>> end error output > Output retained on that host in: /var/spool/torque/undelivered/658.nagrp2..ER > ---------------------------------------------------------- > > Note: When manually check, the "retained" file is not there: > "/var/spool/torque/undelivered/658.nagrp2..ER" > > I wonder why "Host key verification failed"? Could this be the cause? > (I can ssh to all nodes no problem) > > Any hint to look further is appreciated. > > Zhiliang >