Re: Running R from Unix Command Line

Hi Shalini,

Your best best is have the perl script write a bash/csh script and have 
perl call the bash/csh script.

Cheers
Noel
>
> Hello all,
>
> If someone can please throw a light on this I would be eternally 
> greatful :
>
> I have a CGI PERL Script that needs to invoke the R program on the 
> command line of UNIX and send commands to it.
>
> Can I do this using the normal system command? Would this work? If so, 
> how can I specify the commands without clashing with the double quotes 
> of perl and that of R?
>
> If not, could someone please suggest an alternative to this ?
>
> Thanks
>
> Shalini
>
>
>
>
>
> Image by FlamingText.com <http://www.flamingtext.com/hmail.html> 
>
>
>
>     ------------------------------------------------------------------------
>     From: /João Miguel Fernandes <[email protected]>/
>     Reply-To: /Programming for bioinformatics
>     <[email protected]>/
>     To: /[email protected]/
>     Subject: /[Biodevelopers] CfP: MOMPES 2007, published by IEEE CS
>     Press/
>     Date: /Sat, 8 Jul 2006 15:26:20 +0100/
>     >[Apologies for multiple copies]
>     >
>     >******************************************************************
>     > CALL FOR PAPERS
>     >
>     > 4th International Workshop on Model-based Methodologies for
>     > Pervasive and Embedded Software (MOMPES 2006)
>     >
>     > http://www.di.uminho.pt/mompes
>     >
>     > within the
>     >7th European Joint Conferences on Theory and Practice of Software
>     > (ETAPS 2007)
>     > http://www.di.uminho.pt/etaps07/
>     > Braga - Portugal
>     > March 31, 2007
>     >******************************************************************
>     >Model Based Development (MBD) comprises approaches to software
>     >development, which heavily rely on modelling and the systematic
>     >transition from models to executable code. One of these approaches
>     >is the OMG's Model Driven Architecture (MDA), which is based on
>     >the separation between the specification of a system and its
>     >implementation using specific platforms.
>     >
>     >This workshop focuses on the theoretical and practical aspects
>     >related with the adoption of MDA and other MBD methodologies
>     >(notation, process, methods, and tools) for supporting the
>     >construction of computer-based systems, and more specifically,
>     >pervasive and embedded software.
>     >
>     >Suggested areas of interest in the workshop include, but are not
>     >restricted to:
>     >
>     >Suggested areas of interest in the workshop include, but are not
>     >restricted to:
>     >- Specification of Platform Independent Models (PIMs) and Platform
>     > Specific Models (PSMs)
>     >- PIM to PSM transformations
>     >- MBD process for embedded and pervasive software
>     >- Automatic code generation in MBD
>     >- Testing and validation in MBD
>     >- Tools for MBD of embedded and pervasive software
>     >- Model-based development of hardware and software systems
>     >- Model-based architectures
>     >- Meta-Models for MBD
>     >- System evolution and maintenance
>     >- Precise semantics and consistency checks in MBD
>     >- Integration of feature modelling
>     >- Case studies on the application of MBD
>     >- Models and techniques to enhance the security of embedded and
>     > pervasive software
>     >
>     >The official language is English.
>     >Authors are requested to submit a PDF version of their papers in
>     >IEEE 8.5"x11" Two-Column format (see "Information for Authors" tab
>     >at
>     >http://www.computer.org/portal/site/cscps/index.jsp).
>     >Papers should not exceed 10 pages, including figures, references,
>     >and appendices.
>     >Submitted papers will be reviewed by at least 3 PC members.
>     >Authors of accepted papers must sign the IEEE copyright form.
>     >Full papers exceeding 10 pages will be charged for pages in excess.
>     >At least one author of each accepted submission must register
>     >and present the paper at the workshop.
>     >The proceedings will be published by IEEE Computer Society Press.
>     >Position papers will be published online.
>     >For details about the paper submission process, please consult the
>     >workshop website.
>     >
>     >******************************************************************
>     >Important Dates:
>     >- Submission of full papers: 23.Oct.2006
>     >- Notification of acceptance: 27.Nov.2006
>     >- Camera-ready paper version: 29.Dec.2006
>     >- Workshop at ETAPS 2007: 31.Mar.2007
>     >
>     >******************************************************************
>     >Organizing Committee:
>     >- João M. Fernandes U Minho (PT)
>     >- Ricardo J. Machado U Minho (PT)
>     >- Siobhan Clarke Trinity CD (IE)
>     >- Ridha Khedri McMaster U (CA)
>     >
>     >Programme Committee:
>     >- Jean Bézivin U Nantes (FR)
>     >- Siobhan Clarke Trinity CD (IE)
>     >- Jörg Desel KU Eichs.-Ingolstadt (DE)
>     >- Dov Dori Technion (IL)
>     >- João M. Fernandes U Minho (PT)
>     >- Robert B. France Colorado SU (US)
>     >- Antônio A. Fröhlich UF Santa Catarina (BR)
>     >- Lidia Fuentes U Malaga (ES)
>     >- Hassan Gomaa George Mason U (US)
>     >- Luís Gomes UN Lisboa (PT)
>     >- David Harel Weizmann I (IL)
>     >- Mike Hinchey NASA (US)
>     >- Jens B. Jorgensen U Aarhus (DK)
>     >- Ridha Khedri McMaster U (CA)
>     >- Pericles Loucopoulos UMIST (UK)
>     >- Ricardo J. Machado U Minho (PT)
>     >- Dirk Muthig IESE (DE)
>     >- Franz Rammig U Paderborn (DE)
>     >- Bran Selic IBM Rational Software (CA)
>     >- João P. Sousa CMU (US)
>     >- Dragos Truscan TUCS (FI)
>     >- Arie van Deursen CWI (NL)
>     >******************************************************************
>     >
>     >--
>     >Joao M. Fernandes, PhD.
>     >Dept. Informatics
>     >Universidade do Minho
>     >4710-057 Braga, PORTUGAL
>     >
>     >Phone: +351-253604454/9
>     >Fax: +351-253604471
>     >Email: jmf(AT)di(DOT)uminho(DOT)pt
>     >Web: www.di.uminho.pt/~jmf
>     >
>     >
>
>     ><< smime.p7s >>
>
>     >_______________________________________________
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>     >https://bioinformatics.org/mailman/listinfo/biodevelopers
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-- 
PhD student
Department of Biochemistry and Molecular Biology
Monash University
Clayton 3168
Victoria
Australia
Ph: +61 3 9905 1418
e-mail: [email protected]

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