RE: Running R from Unix Command Line

Hi Shalini

 

Your best bet is to use R –vanilla in the command line and a script with the
commands you need that will be read by R and executed. I believe that there
might be other ways but this is fairly simple to develop.

 

Take a look on the link below regarding a discussion of similar features on
the R list.

 

http://tolstoy.newcastle.edu.au/R/devel/05/09/2448.html

 

HTH

 

Paulo

 

  _____  

From: [email protected]
[mailto:[email protected]] On
Behalf Of Shalini Sridhar
Sent: August 3, 2006 6:42 AM
To: [email protected]
Subject: [Biodevelopers] Running R from Unix Command Line

 

Hello all,

If someone can please throw a light on this I would be eternally greatful :

I have a CGI PERL Script that needs to invoke the R program on the command
line of UNIX and send commands to it.

Can I do this using the normal system command? Would this work? If so, how
can I specify the commands without clashing with the double quotes of perl
and that of R?

If not, could someone please suggest an alternative to this ?

Thanks

Shalini





 

 <http://www.flamingtext.com/hmail.html> Image by FlamingText.com 





  _____  


From: Joco Miguel Fernandes <[email protected]>
Reply-To: Programming for bioinformatics <[email protected]>
To: [email protected]
Subject: [Biodevelopers] CfP: MOMPES 2007, published by IEEE CS Press
Date: Sat, 8 Jul 2006 15:26:20 +0100
>[Apologies for multiple copies]
>
>******************************************************************
> CALL FOR PAPERS
>
> 4th International Workshop on Model-based Methodologies for
> Pervasive and Embedded Software (MOMPES 2006)
>
> http://www.di.uminho.pt/mompes
>
> within the
>7th European Joint Conferences on Theory and Practice of Software
> (ETAPS 2007)
> http://www.di.uminho.pt/etaps07/
> Braga - Portugal
> March 31, 2007
>******************************************************************
>Model Based Development (MBD) comprises approaches to software
>development, which heavily rely on modelling and the systematic
>transition from models to executable code. One of these approaches
>is the OMGs Model Driven Architecture (MDA), which is based on
>the separation between the specification of a system and its
>implementation using specific platforms.
>
>This workshop focuses on the theoretical and practical aspects
>related with the adoption of MDA and other MBD methodologies
>(notation, process, methods, and tools) for supporting the
>construction of computer-based systems, and more specifically,
>pervasive and embedded software.
>
>Suggested areas of interest in the workshop include, but are not
>restricted to:
>
>Suggested areas of interest in the workshop include, but are not
>restricted to:
>- Specification of Platform Independent Models (PIMs) and Platform
> Specific Models (PSMs)
>- PIM to PSM transformations
>- MBD process for embedded and pervasive software
>- Automatic code generation in MBD
>- Testing and validation in MBD
>- Tools for MBD of embedded and pervasive software
>- Model-based development of hardware and software systems
>- Model-based architectures
>- Meta-Models for MBD
>- System evolution and maintenance
>- Precise semantics and consistency checks in MBD
>- Integration of feature modelling
>- Case studies on the application of MBD
>- Models and techniques to enhance the security of embedded and
> pervasive software
>
>The official language is English.
>Authors are requested to submit a PDF version of their papers in
>IEEE 8.5"x11" Two-Column format (see "Information for Authors" tab 
>at
>http://www.computer.org/portal/site/cscps/index.jsp).
>Papers should not exceed 10 pages, including figures, references,
>and appendices.
>Submitted papers will be reviewed by at least 3 PC members.
>Authors of accepted papers must sign the IEEE copyright form.
>Full papers exceeding 10 pages will be charged for pages in excess.
>At least one author of each accepted submission must register
>and present the paper at the workshop.
>The proceedings will be published by IEEE Computer Society Press.
>Position papers will be published online.
>For details about the paper submission process, please consult the
>workshop website.
>
>******************************************************************
>Important Dates:
>- Submission of full papers: 23.Oct.2006
>- Notification of acceptance: 27.Nov.2006
>- Camera-ready paper version: 29.Dec.2006
>- Workshop at ETAPS 2007: 31.Mar.2007
>
>******************************************************************
>Organizing Committee:
>- Joco M. Fernandes U Minho (PT)
>- Ricardo J. Machado U Minho (PT)
>- Siobhan Clarke Trinity CD (IE)
>- Ridha Khedri McMaster U (CA)
>
>Programme Committee:
>- Jean Bizivin U Nantes (FR)
>- Siobhan Clarke Trinity CD (IE)
>- Jvrg Desel KU Eichs.-Ingolstadt (DE)
>- Dov Dori Technion (IL)
>- Joco M. Fernandes U Minho (PT)
>- Robert B. France Colorado SU (US)
>- Anttnio A. Frvhlich UF Santa Catarina (BR)
>- Lidia Fuentes U Malaga (ES)
>- Hassan Gomaa George Mason U (US)
>- Lums Gomes UN Lisboa (PT)
>- David Harel Weizmann I (IL)
>- Mike Hinchey NASA (US)
>- Jens B. Jorgensen U Aarhus (DK)
>- Ridha Khedri McMaster U (CA)
>- Pericles Loucopoulos UMIST (UK)
>- Ricardo J. Machado U Minho (PT)
>- Dirk Muthig IESE (DE)
>- Franz Rammig U Paderborn (DE)
>- Bran Selic IBM Rational Software (CA)
>- Joco P. Sousa CMU (US)
>- Dragos Truscan TUCS (FI)
>- Arie van Deursen CWI (NL)
>******************************************************************
>
>--
>Joao M. Fernandes, PhD.
>Dept. Informatics
>Universidade do Minho
>4710-057 Braga, PORTUGAL
>
>Phone: +351-253604454/9
>Fax: +351-253604471
>Email: jmf(AT)di(DOT)uminho(DOT)pt
>Web: www.di.uminho.pt/~jmf
>
>

><< smime.p7s >> 

>_______________________________________________
>Biodevelopers mailing list
>[email protected]
>https://bioinformatics.org/mailman/listinfo/biodevelopers


  _____  

E-mail classificado pelo Identificador de Spam Inteligente.
Para alterar a categoria classificada, visite o Terra Mail
<http://mail.terra.com.br/protected_email/imail/imail.cgi?+_u=pnuin&_l=1,115
4647690.240947.27090.mindelo.hst.terra.com.br,11081,Des15,Des15>  


  _____  

Esta mensagem foi verificada pelo E-mail Protegido Terra
<http://mail.terra.com.br/> .
Scan engine: McAfee VirusScan / Atualizado em 03/08/2006 / Versão:
4.4.00/4821
Proteja o seu e-mail Terra: http://mail.terra.com.br/

_______________________________________________
Biodevelopers mailing list
[email protected]
https://bioinformatics.org/mailman/listinfo/biodevelopers