Re: Looking for repeat motifs - ideas?
"J.W. Bizzaro" <[email protected]> Wed, 27 Feb 2008 16:49:28 -0500
| Newsgroups | gmane.science.biology.informatics.devel |
|---|---|
| Message-ID | <[email protected]> |
Mike,
Using RegExes, how would you handle limited mismatches within the repeated motif, esp. when its position is unknown?
Jeff
Mike Marchywka wrote:
>
> The regex people probably question my syntax but I'm using things like
> [\1]{10,20}.{10,20}[\2]{10,20}.{10,20}[\1]{10,20}[\2]{10,20}
> to find pseudo knots with distance of 10-20 between reverse-complement regions.
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J.W. Bizzaro
Bioinformatics Organization, Inc. (Bioinformatics.Org)
E-mail: [email protected]
Phone: +1 508 890 8600
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