Re: Looking for repeat motifs - ideas?
"J.W. Bizzaro" <[email protected]> Wed, 27 Feb 2008 16:55:49 -0500
| Newsgroups | gmane.science.biology.informatics.devel |
|---|---|
| Message-ID | <[email protected]> |
Michael, What threshold would you use for gaps and mismatches? If you can have any number of mismatches within the motif and any size gap, it becomes more of problem in pattern recognition. Jeff Michael Nuhn wrote: > TTTAAG GCGC TTTAAG > > where the actual sequence of the repeat (TTTAAG) is unknown in advance and > may have mismatches to the repeat. -- J.W. Bizzaro Bioinformatics Organization, Inc. (Bioinformatics.Org) E-mail: [email protected] Phone: +1 508 890 8600 --