Blastall core dump on Alpha running Redhat 7.2
Chris Dwan <[email protected]>
| Newsgroups | gmane.science.biology.informatics.devel |
|---|---|
| Message-ID | <[email protected]> |
I have an odd blastall behavior: We have two sequences, which appear to be anathema to blastall version 2.2.8 running on an AlphaServer E40, Redhat 7.2 as distributed by HP. The error occurs both with the downloaded binaries, and with a version of the ncbi toolbox which I built locally. If I attempt to align these sequences in nucleic acid space using bl2seq (or blastall, searching with either against a formatted target containing the other) then I get a core dump. The core file indicates that an "error 8: Arithmetic error" was the cause of death. Tblastx also works fine. Everything works just peachy on an Intel Linux system, or an Apple OS X system. I would appreciate any suggestions, hints, or fixes. The sequences are below. -Chris Dwan >93-NE-13 ATGTTGGGGAAATGCTTGACCGCGGGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATC GTGCCGTCCTGTTTTGTTGCGCTCGTCAGCGCCAGCAACAGCAACAGCTCCCATTTACAG CTGATTTACAACTTGACGCTATGTGAGCTGAATGGCACGGATTGGCTAGCTAATAGATTT GATTGGGCAGTGGAATGTTTTGTCATTTTTCCTGTGCTGACTCACATTGTCTCCTATGGT GCCCTCACTACTAGCCATTTCCTTGACACAGTCGGTCTGGTCACTGTGTCTACCGCCGGT TTTCGTCACGGGCGGTATGTTCTGAGTAGCATCTACGCGGTCTGTGCCCTGGCTGCGTTG TTTTGCTTCGTCATTAGATTTGTGAAGAATTGCATGTCCTGGCGCTATTCATGTACCAGA TATACCAACTTTCTTCTGGATACTAAGGGCAGACTCTATCGTTGGCGGTCGCCCGTCATC ATAGAGAAAAATGGTAAAGTTGAGGTCGAAGGTCATCTGATCGACCTCAAGAGAGTTGTG CTTGATGGTTCCGTGGCAACCCCTGTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCT TAG >91-KY-3 ATGTTGGGGAAATGCTTGACCGCGGGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATC GTGCCGTCCTGTTTTGTTGCGCTCGTCAGCGCCAACAGCAACAGCAGCTCCCATTTACAG CTGATTTACAACTTGACGCTATGTGAGCTGAATGGCACAGATTGGCTAGCTAGTAGATTT GATTGGGCAGTGGAGTGTTTTGTCATCTTTCCTGTGCTGACTCACATTGTCTCCTATGGC GCCCTCACTACCAGCCATTTCCTTGACACAGTCGGTCTGGCCACTGTGTCTACCGCCGGT TTTCTTCGCGGGCGGTATGTTCTGAGTAGCATCTACGCGGTCTGTGCCCTGGCTGCGTTG TTTTGCTTCGTCATTAGATTGGCGAAGAATTGCATGTCCTGGCGCTATTCATGTACCAGA TATACCAACTTTCTTCTGGATACTAAGGGCAGACTCTATCGTTGGCGGTCGCCCGTCATC ATAGAGAAAAAGGGTAAAGTTGAGGTCGAAGGTCATCTGATCGACCTCAAGAGAGTTGTG CTTGATGGTTCCGTGGCAACCCCTGTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCT TAG