Re: Can't get refdbib to work

Josef Karthauser <[email protected]> Fri, 19 Jan 2007 12:30:21 +0000

Newsgroups	gmane.text.refdb.general
Message-ID	<[email protected]>

On Fri, Jan 19, 2007 at 10:10:34AM +0100, Markus Hoenicka wrote:
> Josef Karthauser <[email protected]> was heard to say:
> 
> > As you can see, the .aux file contains a single citation
> > 'Overduin1998pn', which it appears to retrieve ok '1 retrieved', but
> > then it also says '1 failed' and no output is produced.
> 
> Could you please run the application server refdbd with a log level of 7 and
> send me the log output of the getbib command? E.g. stop the server using
> "refdbctl stop", then run refdbd -s -e 2 -l 7 -L /home/joe/getbib.log, run
> refdbib in a separate terminal, and kill refdbd with Ctrl-C when done.
> 

Sure.  See the attached.  It looks like it might be complaining about a
missing style, however I couldn't find anything in the documentation
which talked about setting up styles for bibtex output; it would also be
useful for revdbib to report the reason for the error if this is the
case.

> > BTW, how do I do a query in refdbc on the citation key?  I don't appear
> > to be able to do:
> >
> >     refdbc: getref :ID:~'Overduin1998pn'
> 
> RefDB treats numerical ID values and citation keys separately, although they
> have to share the same field (ID  - ) in RIS datasets. :ID: looks for a
> numerical ID, whereas :CK: looks for a citation key. The following command
> should work:
> 
>   refdbc: getref :CK:=Overduin1998pn
> 

Brilliant, I was wondering - I didn't find this in the documentation
anywhere.

Joe
-- 
=== Josef Karthauser ([email protected]) === http://x2obuilder.com/tao ===

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getbib.log (text/plain, 7.6 KB)

7:pid=1531:Fri Jan 19 12:27:30 2007:dbi_driver_dir went to:
7:pid=1531:Fri Jan 19 12:27:30 2007:
7:pid=1531:Fri Jan 19 12:27:30 2007:dbi is up using default driver dir
6:pid=1531:Fri Jan 19 12:27:30 2007:Available libdbi database drivers:
6:pid=1531:Fri Jan 19 12:27:30 2007:sqlite
6:pid=1531:Fri Jan 19 12:27:30 2007:Requested libdbi driver found
6:pid=1531:Fri Jan 19 12:27:30 2007:Database directory:
6:pid=1531:Fri Jan 19 12:27:30 2007:/usr/local/var/lib/refdb/db
6:pid=1531:Fri Jan 19 12:27:30 2007:application server started
6:pid=1531:Fri Jan 19 12:27:30 2007:share extended notes by default
7:pid=1531:Fri Jan 19 12:27:30 2007:use /tmp/refdbd_fifo1531 as fifo
6:pid=1531:Fri Jan 19 12:27:30 2007:server waiting n_max_fd=5
6:pid=1531:Fri Jan 19 12:27:41 2007:adding client 127.0.0.1 on fd 6
6:pid=1531:Fri Jan 19 12:27:41 2007:server waiting n_max_fd=6
7:pid=1533:Fri Jan 19 12:27:41 2007:try to read from client
6:pid=1533:Fri Jan 19 12:27:41 2007:serving client on fd 6 with protocol version 4
7:pid=1533:Fri Jan 19 12:27:41 2007:102-63-57-24
7:pid=1533:Fri Jan 19 12:27:41 2007:send pseudo-random string to client
7:pid=1533:Fri Jan 19 12:27:41 2007:selectdb joe -u joe
6:pid=1533:Fri Jan 19 12:27:41 2007:dbi is up
7:pid=1533:Fri Jan 19 12:27:41 2007:localhost
7:pid=1533:Fri Jan 19 12:27:41 2007:joe
7:pid=1533:Fri Jan 19 12:27:41 2007:
7:pid=1533:Fri Jan 19 12:27:41 2007:
7:pid=1533:Fri Jan 19 12:27:41 2007:
7:pid=1533:Fri Jan 19 12:27:41 2007:sqlite
7:pid=1533:Fri Jan 19 12:27:41 2007:/usr/local/var/lib/refdb/db
7:pid=1533:Fri Jan 19 12:27:41 2007:
7:pid=1533:Fri Jan 19 12:27:41 2007:refdb
7:pid=1533:Fri Jan 19 12:27:41 2007:connected to database server using database:
7:pid=1533:Fri Jan 19 12:27:41 2007:refdb
6:pid=1533:Fri Jan 19 12:27:41 2007:updated version file:
3:pid=1533:Fri Jan 19 12:27:41 2007:/usr/local/var/lib/refdb/db/DB_VERSION
7:pid=1533:Fri Jan 19 12:27:41 2007:Main database looks ok:
7:pid=1533:Fri Jan 19 12:27:41 2007:refdb
7:pid=1533:Fri Jan 19 12:27:41 2007:localhost
7:pid=1533:Fri Jan 19 12:27:41 2007:joe
7:pid=1533:Fri Jan 19 12:27:41 2007:
7:pid=1533:Fri Jan 19 12:27:41 2007:
7:pid=1533:Fri Jan 19 12:27:41 2007:
7:pid=1533:Fri Jan 19 12:27:41 2007:sqlite
7:pid=1533:Fri Jan 19 12:27:41 2007:/usr/local/var/lib/refdb/db
7:pid=1533:Fri Jan 19 12:27:41 2007:
7:pid=1533:Fri Jan 19 12:27:41 2007:refdb
7:pid=1533:Fri Jan 19 12:27:41 2007:connected to database server using database:
7:pid=1533:Fri Jan 19 12:27:41 2007:refdb
7:pid=1533:Fri Jan 19 12:27:41 2007:
7:pid=1533:Fri Jan 19 12:27:41 2007:localhost
7:pid=1533:Fri Jan 19 12:27:41 2007:joe
7:pid=1533:Fri Jan 19 12:27:41 2007:
7:pid=1533:Fri Jan 19 12:27:41 2007:
7:pid=1533:Fri Jan 19 12:27:41 2007:
7:pid=1533:Fri Jan 19 12:27:41 2007:sqlite
7:pid=1533:Fri Jan 19 12:27:41 2007:/usr/local/var/lib/refdb/db
7:pid=1533:Fri Jan 19 12:27:41 2007:
7:pid=1533:Fri Jan 19 12:27:41 2007:joe
7:pid=1533:Fri Jan 19 12:27:41 2007:connected to database server using database:
7:pid=1533:Fri Jan 19 12:27:41 2007:joe
7:pid=1533:Fri Jan 19 12:27:41 2007:SELECT meta_app,meta_type,meta_dbversion from t_meta
7:pid=1533:Fri Jan 19 12:27:41 2007:command processing done, finish dialog now
6:pid=1533:Fri Jan 19 12:27:41 2007:child finished client on fd 6
6:pid=1531:Fri Jan 19 12:27:41 2007:parent removing client on fd 6
6:pid=1531:Fri Jan 19 12:27:41 2007:server waiting n_max_fd=5
6:pid=1531:Fri Jan 19 12:27:41 2007:child exited with code 0
6:pid=1531:Fri Jan 19 12:27:41 2007:server waiting n_max_fd=5
6:pid=1531:Fri Jan 19 12:27:48 2007:adding client 127.0.0.1 on fd 6
6:pid=1531:Fri Jan 19 12:27:48 2007:server waiting n_max_fd=6
7:pid=1537:Fri Jan 19 12:27:48 2007:try to read from client
6:pid=1537:Fri Jan 19 12:27:48 2007:serving client on fd 6 with protocol version 4
7:pid=1537:Fri Jan 19 12:27:48 2007:102-56-83-44
7:pid=1537:Fri Jan 19 12:27:48 2007:send pseudo-random string to client
7:pid=1537:Fri Jan 19 12:27:48 2007:gettexbib  -u joe -d joe -s name 16
6:pid=1537:Fri Jan 19 12:27:48 2007:dbi is up
7:pid=1537:Fri Jan 19 12:27:48 2007:localhost
7:pid=1537:Fri Jan 19 12:27:48 2007:joe
7:pid=1537:Fri Jan 19 12:27:48 2007:
7:pid=1537:Fri Jan 19 12:27:48 2007:joe
7:pid=1537:Fri Jan 19 12:27:48 2007:
7:pid=1537:Fri Jan 19 12:27:48 2007:sqlite
7:pid=1537:Fri Jan 19 12:27:48 2007:/usr/local/var/lib/refdb/db
7:pid=1537:Fri Jan 19 12:27:48 2007:
7:pid=1537:Fri Jan 19 12:27:48 2007:refdb
7:pid=1537:Fri Jan 19 12:27:48 2007:connected to database server using database:
7:pid=1537:Fri Jan 19 12:27:48 2007:refdb
6:pid=1537:Fri Jan 19 12:27:48 2007:updated version file:
3:pid=1537:Fri Jan 19 12:27:48 2007:/usr/local/var/lib/refdb/db/DB_VERSION
7:pid=1537:Fri Jan 19 12:27:48 2007:Main database looks ok:
7:pid=1537:Fri Jan 19 12:27:48 2007:refdb
7:pid=1537:Fri Jan 19 12:27:48 2007:localhost
7:pid=1537:Fri Jan 19 12:27:48 2007:joe
7:pid=1537:Fri Jan 19 12:27:48 2007:
7:pid=1537:Fri Jan 19 12:27:48 2007:joe
7:pid=1537:Fri Jan 19 12:27:48 2007:
7:pid=1537:Fri Jan 19 12:27:48 2007:sqlite
7:pid=1537:Fri Jan 19 12:27:48 2007:/usr/local/var/lib/refdb/db
7:pid=1537:Fri Jan 19 12:27:48 2007:
7:pid=1537:Fri Jan 19 12:27:48 2007:joe
7:pid=1537:Fri Jan 19 12:27:48 2007:SELECT meta_app,meta_type,meta_dbversion from t_meta
7:pid=1537:Fri Jan 19 12:27:48 2007:connected to database server using database:
7:pid=1537:Fri Jan 19 12:27:48 2007:joe
7:pid=1537:Fri Jan 19 12:27:48 2007:localhost
7:pid=1537:Fri Jan 19 12:27:48 2007:joe
7:pid=1537:Fri Jan 19 12:27:48 2007:
7:pid=1537:Fri Jan 19 12:27:48 2007:joe
7:pid=1537:Fri Jan 19 12:27:48 2007:
7:pid=1537:Fri Jan 19 12:27:48 2007:sqlite
7:pid=1537:Fri Jan 19 12:27:48 2007:/usr/local/var/lib/refdb/db
7:pid=1537:Fri Jan 19 12:27:48 2007:
7:pid=1537:Fri Jan 19 12:27:48 2007:joe
7:pid=1537:Fri Jan 19 12:27:48 2007:SELECT meta_app,meta_type,meta_dbversion from t_meta
7:pid=1537:Fri Jan 19 12:27:48 2007:connected to database server using database:
7:pid=1537:Fri Jan 19 12:27:48 2007:joe
7:pid=1537:Fri Jan 19 12:27:48 2007:SELECT DISTINCT t_refdb.refdb_id, t_refdb.refdb_citekey, t_refdb.refdb_type, t_refdb.refdb_pubyear, t_refdb.refdb_startpage, t_refdb.refdb_endpage, t_refdb.refdb_abstract, t_refdb.refdb_title, t_refdb.refdb_volume, t_refdb.refdb_issue, t_refdb.refdb_booktitle, t_refdb.refdb_city, t_refdb.refdb_publisher, t_refdb.refdb_title_series, t_refdb.refdb_address, t_refdb.refdb_issn, t_refdb.refdb_periodical_id, t_refdb.refdb_pyother_info, t_refdb.refdb_secyear, t_refdb.refdb_secother_info, t_refdb.refdb_user1, t_refdb.refdb_user2, t_refdb.refdb_user3, t_refdb.refdb_user4, t_refdb.refdb_user5, t_refdb.refdb_misc1, t_refdb.refdb_misc2, t_refdb.refdb_misc3 FROM t_refdb WHERE t_refdb.refdb_citekey='Overduin1997'
7:pid=1537:Fri Jan 19 12:27:48 2007:localhost
7:pid=1537:Fri Jan 19 12:27:48 2007:joe
7:pid=1537:Fri Jan 19 12:27:48 2007:
7:pid=1537:Fri Jan 19 12:27:48 2007:joe
7:pid=1537:Fri Jan 19 12:27:48 2007:
7:pid=1537:Fri Jan 19 12:27:48 2007:sqlite
7:pid=1537:Fri Jan 19 12:27:48 2007:/usr/local/var/lib/refdb/db
7:pid=1537:Fri Jan 19 12:27:48 2007:
7:pid=1537:Fri Jan 19 12:27:48 2007:refdb
7:pid=1537:Fri Jan 19 12:27:48 2007:connected to database server using database:
7:pid=1537:Fri Jan 19 12:27:48 2007:refdb
7:pid=1537:Fri Jan 19 12:27:48 2007:SELECT ID from CITSTYLE where JOURNAL='name'
4:pid=1537:Fri Jan 19 12:27:48 2007:select failed
7:pid=1537:Fri Jan 19 12:27:49 2007:command processing done, finish dialog now
6:pid=1537:Fri Jan 19 12:27:49 2007:child finished client on fd 6
6:pid=1531:Fri Jan 19 12:27:48 2007:parent removing client on fd 6
6:pid=1531:Fri Jan 19 12:27:48 2007:server waiting n_max_fd=5
6:pid=1531:Fri Jan 19 12:27:49 2007:child exited with code 0
6:pid=1531:Fri Jan 19 12:27:49 2007:server waiting n_max_fd=5
6:pid=1531:Fri Jan 19 12:27:56 2007:server exited gracefully

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