No inline metadata reader available for version 109

Due to an expected crash of a server, a few (3) entries in the XML 
database were corrupted. All but one could be restored from backup, by 
deleting the affected entry and uploading the entry from backup. In all 
these cases, the affected entry lost some data, causing XML parsing errors.

However, in one case, I receive the following error:

   No inline metadata reader available for version 109

This prevents me to read or write that entry in question. All actions 
cause the above error message to appear. This is very unfortunate as 
XIndice has been extremely stable for years now. For the backup, I also 
extract all entries into the separate location (in addition to just 
copying the actual database), but now of course the extraction actually 
fails:


[WARN] XMLCompressedInput - -invalid node type : 5
[WARN] XMLCompressedInput - -invalid node type : 5
[WARN] ElementImpl - -ignored exception 
<java.io.EOFException>java.io.EOFException
         at java.io.DataInputStream.readShort(DataInputStream.java:298)
         at 
org.apache.xindice.xml.dom.ElementImpl.loadAttributes(ElementImpl.java:175)
.....
[WARN] ElementImpl - -ignored exception 
<java.lang.NullPointerException>java.lang.NullPointerException
         at 
org.apache.xindice.xml.dom.ElementImpl.loadAttributes(ElementImpl.java:184)
...

What would be the appropriate course of action to resolve this issue. Is 
there a way to extract the binary file in another way (not XML-based) so 
that I manually delete the affected entry.

XIndice version: v1.1b5-dev

-- 
Andre H. Juffer              | Phone: +358-8-553 1161
Biocenter Oulu and           | Fax: +358-8-553-1141
Department of Biochemistry   | Email: [email protected]
University of Oulu, Finland  | WWW: www.biochem.oulu.fi/Biocomputing/
StruBioCat                   | WWW: www.strubiocat.oulu.fi
NordProt                     | WWW: www.nordprot.org
Triacle Biocomputing         | WWW: www.triacle-bc.com