Re: No inline metadata reader available for version 109

On Jan 24, 2011, at 12:27 PM, Andre Juffer wrote:

> Due to an expected crash of a server, a few (3) entries in the XML =
database were corrupted. All but one could be restored from backup, by =
deleting the affected entry and uploading the entry from backup. In all =
these cases, the affected entry lost some data, causing XML parsing =
errors.
>=20
> However, in one case, I receive the following error:
>=20
>  No inline metadata reader available for version 109
>=20
> This prevents me to read or write that entry in question. All actions =
cause the above error message to appear. This is very unfortunate as =
XIndice has been extremely stable for years now. For the backup, I also =
extract all entries into the separate location (in addition to just =
copying the actual database), but now of course the extraction actually =
fails:
>=20
>=20
> [WARN] XMLCompressedInput - -invalid node type : 5
> [WARN] XMLCompressedInput - -invalid node type : 5
> [WARN] ElementImpl - -ignored exception =
<java.io.EOFException>java.io.EOFException
>        at java.io.DataInputStream.readShort(DataInputStream.java:298)
>        at =
org.apache.xindice.xml.dom.ElementImpl.loadAttributes(ElementImpl.java:175=
)
> .....
> [WARN] ElementImpl - -ignored exception =
<java.lang.NullPointerException>java.lang.NullPointerException
>        at =
org.apache.xindice.xml.dom.ElementImpl.loadAttributes(ElementImpl.java:184=
)
> ...
>=20
> What would be the appropriate course of action to resolve this issue. =
Is there a way to extract the binary file in another way (not XML-based) =
so that I manually delete the affected entry.
>=20
> XIndice version: v1.1b5-dev
>=20

Andre,

Are you trying to retrieve the corrupted document from the database or =
just delete it? If it is the latter, then the simplest way, I think, is =
to create new empty collection and load the existing documents.

Does the exception for XMLCompressedInput happen for the same collection =
and the same corrupt document or for some unrelated backup collection?

Regards,
Natalia

> --=20
> Andre H. Juffer              | Phone: +358-8-553 1161
> Biocenter Oulu and           | Fax: +358-8-553-1141
> Department of Biochemistry   | Email: [email protected]
> University of Oulu, Finland  | WWW: www.biochem.oulu.fi/Biocomputing/
> StruBioCat                   | WWW: www.strubiocat.oulu.fi
> NordProt                     | WWW: www.nordprot.org
> Triacle Biocomputing         | WWW: www.triacle-bc.com