gmane.comp.python.bio.general archive

426 archived articles, newest first (page 2 of 5). Latest articles →

Re: [Biopython] Planning the Biopython 1.84 release
Fri, 28 Jun 2024 10:46:55 +0900
Peter Cock <[email protected]> • #9862
Re: [Biopython] Planning the Biopython 1.84 release
Wed, 26 Jun 2024 11:37:08 +0900
Peter Cock <[email protected]> • #9861
[Biopython] New feature on combining PDB files with 3D molecule files
Thu, 30 May 2024 19:47:22 +0100
Natasha Sanjrani <[email protected]> • #9860
[Biopython] Planning the Biopython 1.84 release
Wed, 22 May 2024 13:39:37 +0100
Peter Cock <[email protected]> • #9859
Re: [Biopython] pd.df.to_csv(..., compression="bgzip")?
Thu, 14 Mar 2024 22:06:34 +0000
Dan Bolser <[email protected]> • #9858
Re: [Biopython] pd.df.to_csv(..., compression="bgzip")?
Wed, 13 Mar 2024 11:22:57 +0000
Dan Bolser <[email protected]> • #9857
Re: [Biopython] pd.df.to_csv(..., compression="bgzip")?
Wed, 13 Mar 2024 11:18:09 +0000
Peter Cock <[email protected]> • #9856
Re: [Biopython] pd.df.to_csv(..., compression="bgzip")?
Wed, 13 Mar 2024 11:08:20 +0000
Dan Bolser <[email protected]> • #9855
Re: [Biopython] pd.df.to_csv(..., compression="bgzip")?
Wed, 13 Mar 2024 10:49:08 +0000
Peter Cock <[email protected]> • #9854
Re: [Biopython] pd.df.to_csv(..., compression="bgzip")?
Wed, 13 Mar 2024 10:04:34 +0000
Dan Bolser <[email protected]> • #9853
Re: [Biopython] pd.df.to_csv(..., compression="bgzip")?
Tue, 12 Mar 2024 14:11:30 -0500
Sean Brimer <[email protected]> • #9852
[Biopython] pd.df.to_csv(..., compression="bgzip")?
Tue, 12 Mar 2024 17:52:59 +0000
Dan Bolser <[email protected]> • #9851
[Biopython] Biopython 1.84: [numpy/numpy] NumPy 2.0 development status & announcements (Issue #24300)
Sat, 9 Mar 2024 13:06:54 +0000
Peter Cock <[email protected]> • #9850
Re: [Biopython] What is our thinking about RCSB BCIF format?
Wed, 28 Feb 2024 23:57:19 +0000
Peter Cock <[email protected]> • #9849
Re: [Biopython] Variation in distance calculation between Bio.PDB and PyMol
Tue, 27 Feb 2024 23:11:20 +0000
João Rodrigues <[email protected]> • #9848
Re: [Biopython] Variation in distance calculation between Bio.PDB and PyMol
Tue, 27 Feb 2024 22:07:15 +0000
Peter Cock <[email protected]> • #9847
[Biopython] Variation in distance calculation between Bio.PDB and PyMol
Tue, 27 Feb 2024 23:48:51 +0200
Salma Yahia <[email protected]> • #9846
Re: [Biopython] Biopython 1.83 released
Mon, 26 Feb 2024 13:51:55 +0000
Peter Cock <[email protected]> • #9845
[Biopython] What is our thinking about RCSB BCIF format?
Wed, 21 Feb 2024 17:26:32 +0000
"Moth, Christopher W" <[email protected]> • #9844
Re: [Biopython] Struggling with MSA...
Sat, 17 Feb 2024 08:27:35 +0000 (UTC)
Michiel de Hoon <[email protected]> • #9843
Re: [Biopython] Struggling with MSA...
Sat, 17 Feb 2024 08:24:38 +0100
"marek.schwarz" <[email protected]> • #9842
Re: [Biopython] Struggling with MSA...
Fri, 16 Feb 2024 23:42:01 +0000 (UTC)
Michiel de Hoon <[email protected]> • #9841
Re: [Biopython] Struggling with MSA...
Fri, 16 Feb 2024 10:59:32 +0000
Dan Bolser <[email protected]> • #9840
Re: [Biopython] Struggling with MSA...
Thu, 15 Feb 2024 16:18:49 +0000
Dan Bolser <[email protected]> • #9839
Re: [Biopython] Struggling with MSA...
Thu, 15 Feb 2024 16:13:46 +0000
Peter Cock <[email protected]> • #9838
Re: [Biopython] Struggling with MSA...
Thu, 15 Feb 2024 16:07:07 +0000
Dan Bolser <[email protected]> • #9837
Re: [Biopython] Struggling with MSA...
Thu, 15 Feb 2024 16:02:06 +0000
Peter Cock <[email protected]> • #9836
Re: [Biopython] Struggling with MSA...
Thu, 15 Feb 2024 15:56:58 +0000
Dan Bolser <[email protected]> • #9835
Re: [Biopython] Struggling with MSA...
Thu, 15 Feb 2024 15:47:33 +0000
Dan Bolser <[email protected]> • #9834
Re: [Biopython] Struggling with MSA...
Thu, 15 Feb 2024 15:28:43 +0000
Peter Cock <[email protected]> • #9833
[Biopython] Struggling with MSA...
Thu, 15 Feb 2024 15:09:58 +0000
Dan Bolser <[email protected]> • #9832
Re: [Biopython] Biopython Tutorial no longer written in LaTeX, but RST
Tue, 16 Jan 2024 21:44:10 +0000
Peter Cock <[email protected]> • #9831
Re: [Biopython] Contribution Ideas
Mon, 15 Jan 2024 20:47:48 +0000
Peter Cock <[email protected]> • #9830
[Biopython] Contribution Ideas
Mon, 15 Jan 2024 18:39:35 +0000
Will Tyler <[email protected]> • #9829
[Biopython] Biopython 1.83 released
Wed, 10 Jan 2024 12:53:01 +0000
Peter Cock <[email protected]> • #9828
Re: [Biopython] Biopython 1.82 released
Tue, 9 Jan 2024 15:41:50 +0000
Peter Cock <[email protected]> • #9827
Re: [Biopython] Biopython 1.82 released
Tue, 9 Jan 2024 14:12:46 +0000
Peter Cock <[email protected]> • #9826
Re: [Biopython] Biopython 1.82 released
Mon, 8 Jan 2024 15:14:18 +0000
Peter Cock <[email protected]> • #9825
Re: [Biopython] Biopython Tutorial no longer written in LaTeX, but RST
Fri, 5 Jan 2024 22:15:12 +0000
Peter Cock <[email protected]> • #9824
Re: [Biopython] Biopython Tutorial no longer written in LaTeX, but RST
Fri, 5 Jan 2024 18:34:24 +0000
Peter Cock <[email protected]> • #9823
Re: [Biopython] Biopython Tutorial no longer written in LaTeX, but RST
Fri, 5 Jan 2024 09:26:45 -0600
Iddo Friedberg <[email protected]> • #9822
Re: [Biopython] Biopython Tutorial no longer written in LaTeX, but RST
Thu, 4 Jan 2024 20:39:12 +0000
Peter Cock <[email protected]> • #9821
Re: [Biopython] Biopython Tutorial no longer written in LaTeX, but RST
Thu, 4 Jan 2024 20:34:41 +0000
Peter Cock <[email protected]> • #9820
Re: [Biopython] Biopython Tutorial no longer written in LaTeX, but RST
Thu, 4 Jan 2024 13:37:16 -0600
Sean Brimer <[email protected]> • #9819
Re: [Biopython] Biopython Tutorial no longer written in LaTeX, but RST
Thu, 4 Jan 2024 16:43:02 +0000
Peter Cock <[email protected]> • #9818
[Biopython] Biopython Tutorial no longer written in LaTeX, but RST
Thu, 4 Jan 2024 10:04:37 +0000
Peter Cock <[email protected]> • #9817
Re: [Biopython] author affiliations in Entrez / Medline
Wed, 3 Jan 2024 23:51:17 +0000 (UTC)
Michiel de Hoon <[email protected]> • #9816
Re: [Biopython] author affiliations in Entrez / Medline
Wed, 3 Jan 2024 21:35:32 +0000
Peter Cock <[email protected]> • #9815
[Biopython] author affiliations in Entrez / Medline
Wed, 3 Jan 2024 14:58:46 -0600
Iddo Friedberg <[email protected]> • #9814
[Biopython] Biopython 1.82 released
Fri, 22 Dec 2023 15:21:31 +0000
Peter Cock <[email protected]> • #9813
Re: [Biopython] Question: Searching for RNA motifs with PSSM
Fri, 15 Dec 2023 14:55:24 +0100
Váczy-Földi Máté <[email protected]> • #9812
Re: [Biopython] Question: Searching for RNA motifs with PSSM
Fri, 15 Dec 2023 12:05:00 +0000
Peter Cock <[email protected]> • #9811
Re: [Biopython] Question: Searching for RNA motifs with PSSM
Fri, 15 Dec 2023 11:33:27 +0100
Váczy-Földi Máté <[email protected]> • #9810
Re: [Biopython] Question: Searching for RNA motifs with PSSM
Fri, 15 Dec 2023 09:16:19 +0000
Peter Cock <[email protected]> • #9809
[Biopython] Question: Searching for RNA motifs with PSSM
Thu, 14 Dec 2023 17:10:41 +0100
Váczy-Földi Máté <[email protected]> • #9808
Re: [Biopython] BioPython URLError
Thu, 16 Nov 2023 16:34:08 -0800
Jeffrey Posey <[email protected]> • #9807
Re: [Biopython] BioPython URLError
Wed, 15 Nov 2023 15:34:05 -0600
Iddo Friedberg <[email protected]> • #9806
Re: [Biopython] BioPython URLError
Wed, 15 Nov 2023 15:26:40 -0600
Iddo Friedberg <[email protected]> • #9805
Re: [Biopython] BioPython URLError
Wed, 15 Nov 2023 21:19:46 +0000
Peter Cock <[email protected]> • #9804
[Biopython] BioPython URLError
Wed, 15 Nov 2023 07:18:13 -0800
Jeffrey Posey <[email protected]> • #9803
[Biopython] Invitation: Survey on New Peer Reviewing Platform
Sat, 4 Nov 2023 00:09:57 -0300
Tomás Olavarría <[email protected]> • #9802
Re: [Biopython] biopython module for variant descriptions?
Thu, 2 Nov 2023 14:40:40 +0000
Peter Cock <[email protected]> • #9801
Re: [Biopython] biopython module for variant descriptions?
Thu, 2 Nov 2023 05:47:43 -0700
David Merberg <[email protected]> • #9800
Re: [Biopython] biopython module for variant descriptions?
Wed, 1 Nov 2023 19:36:04 +0000
Peter Cock <[email protected]> • #9799
[Biopython] biopython module for variant descriptions?
Tue, 31 Oct 2023 12:31:35 -0700
David Merberg <[email protected]> • #9798
[Biopython] Biopython 1.81 wheels for Python 3.12 now on PyPI
Tue, 24 Oct 2023 20:41:13 +0100
Peter Cock <[email protected]> • #9797
Re: [Biopython] Start and end of feature locations in circular sequences
Thu, 31 Aug 2023 10:46:09 +0100
Peter Cock <[email protected]> • #9796
[Biopython] Start and end of feature locations in circular sequences
Thu, 31 Aug 2023 06:42:00 +0100
"Jan T. Kim" <[email protected]> • #9795
[Biopython] Contribution Ideas
Fri, 25 Aug 2023 19:33:23 +0000 (UTC)
Claudio Fratarcangeli <[email protected]> • #9794
Re: [Biopython] codon-optimization method
Fri, 21 Jul 2023 09:48:26 +0100
Peter Cock <[email protected]> • #9793
[Biopython] codon-optimization method
Thu, 20 Jul 2023 12:09:56 -0400
Alex Crocker <[email protected]> • #9792
Re: [Biopython] PDBIO.save(fh) in BioPython 1.80 always closes the file handle
Fri, 16 Jun 2023 10:54:04 +0200
Adam Sjøgren <[email protected]> • #9791
Re: [Biopython] PDBIO.save(fh) in BioPython 1.80 always closes the file handle
Fri, 16 Jun 2023 07:20:55 +0100
Peter Cock <[email protected]> • #9790
Re: [Biopython] Planning Biopython 1.82
Fri, 09 Jun 2023 10:13:53 +0200
Adam Sjøgren <[email protected]> • #9789
Re: [Biopython] Planning Biopython 1.82
Fri, 19 May 2023 09:17:00 -0400
João Rodrigues <[email protected]> • #9788
Re: [Biopython] Dropping Python 3.7, was: Planning Biopython 1.82
Fri, 19 May 2023 11:15:54 +0100
Peter Cock <[email protected]> • #9787
[Biopython] Dropping Python 3.7, was: Planning Biopython 1.82
Fri, 19 May 2023 10:41:27 +0100
Peter Cock <[email protected]> • #9786
[Biopython] Planning Biopython 1.82
Fri, 19 May 2023 10:30:51 +0100
Peter Cock <[email protected]> • #9785
[Biopython] New Feature Idea
Sat, 15 Apr 2023 21:19:01 -0400
Olin Johnson <[email protected]> • #9784
[Biopython] Fwd: [BOSC] Submit your abstract to BOSC 2023 by April 20! 🍐
Thu, 13 Apr 2023 14:34:55 +0100
Peter Cock <[email protected]> • #9783
Re: [Biopython] New Feature Idea
Thu, 6 Apr 2023 09:12:42 +0100
Peter Cock <[email protected]> • #9782
[Biopython] New Feature Idea
Sat, 1 Apr 2023 11:07:39 -0400
Olin Johnson <[email protected]> • #9781
Re: [Biopython] Bio.pairwise2
Wed, 22 Mar 2023 16:22:43 +0000 (UTC)
Kristian Ullrich <[email protected]> • #9780
Re: [Biopython] Bio.pairwise2
Wed, 22 Mar 2023 11:47:28 +0000
Peter Cock <[email protected]> • #9779
Re: [Biopython] Bio.pairwise2
Wed, 22 Mar 2023 10:37:06 +0000 (UTC)
Michiel de Hoon <[email protected]> • #9778
[Biopython] Bio.pairwise2
Tue, 21 Mar 2023 17:54:14 -0300
Vitoria Zanon <[email protected]> • #9777
Re: DNS changes for Bio*.org domains
Fri, 3 Mar 2023 16:34:58 +0000
Peter Cock <[email protected]> • #9776
[Biopython] DNS changes for Bio*.org domains
Thu, 23 Feb 2023 19:47:48 +0000
Peter Cock <[email protected]> • #9775
Re: [Biopython] Invalid sequence Error(s) from SeqIO module
Wed, 22 Feb 2023 09:37:23 -0600
Sean Brimer <[email protected]> • #9774
Re: [Biopython] Invalid sequence Error(s) from SeqIO module
Sun, 19 Feb 2023 12:44:26 +0000
Peter Cock <[email protected]> • #9773
Re: [Biopython] Invalid sequence Error(s) from SeqIO module
Fri, 17 Feb 2023 10:30:16 -0600
Sean Brimer <[email protected]> • #9772
Re: [Biopython] Invalid sequence Error(s) from SeqIO module
Fri, 17 Feb 2023 12:47:09 +0000
Peter Cock <[email protected]> • #9771
[Biopython] Invalid sequence Error(s) from SeqIO module
Mon, 13 Feb 2023 09:09:23 -0600
Sean Brimer <[email protected]> • #9770
Re: [Biopython] PDBIO.save(fh) in BioPython 1.80 always closes the file handle
Wed, 07 Dec 2022 19:35:15 +0100
Adam Sjøgren <[email protected]> • #9769
[Biopython] PDBIO.save(fh) in BioPython 1.80 always closes the file handle
Wed, 07 Dec 2022 13:33:31 +0100
Adam Sjøgren <[email protected]> • #9768
Re: [Biopython] Rotamer tool for Biopython
Thu, 1 Dec 2022 16:50:36 -0100
João Rodrigues <[email protected]> • #9767
[Biopython] Rotamer tool for Biopython
Thu, 1 Dec 2022 13:00:57 -0300
Gábor Erdős <[email protected]> • #9766
[Biopython] Pull requests ready for merging into Biopython 1.81?
Fri, 18 Nov 2022 22:07:10 +0000
Peter Cock <[email protected]> • #9765
Re: [Biopython] Biopython 1.80 in progress
Fri, 18 Nov 2022 21:57:59 +0000
Peter Cock <[email protected]> • #9764
Re: [Biopython] Biopython 1.80 in progress
Fri, 18 Nov 2022 19:50:41 +0000
Peter Cock <[email protected]> • #9763
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