gmane.comp.python.bio.devel archive
419 archived articles, newest first (page 4 of 5). Latest articles →
CI for Windows
Sat, 19 Nov 2016 13:24:39 -0800[Biopython (old issues only) - Bug #3268] (Closed) Windows and Python 3 specific unicode problem in SeqIO / SeqXML
Fri, 18 Nov 2016 14:33:57 +0000[Biopython (old issues only) - Bug #1999] (Closed) new frame translation method
Thu, 17 Nov 2016 22:28:28 +0000[Biopython (old issues only) - Bug #3173] (Resolved) Bio.Emboss.Primer3 parser incompatibility with Primer3 version 2.2.3
Thu, 17 Nov 2016 21:06:42 +0000[Biopython (old issues only) - Bug #2670] (Closed) Populate seqfeature.display_name
Mon, 14 Nov 2016 23:49:16 +0000Re: Retiring our old RedMine bug tracker
Mon, 14 Nov 2016 13:22:13 -0800Re: Retiring our old RedMine bug tracker
Mon, 14 Nov 2016 17:27:15 +0000[Biopython (old issues only) - Bug #2382] (Closed) Generic Roche or GSFlex "FASTA" parser
Mon, 14 Nov 2016 17:10:13 +0000[Biopython (old issues only) - Bug #2925] (Resolved) false exception in Bio.PDB.NeighborSearch.search
Sat, 12 Nov 2016 22:23:26 +0000[Biopython (old issues only) - Bug #2949] (Resolved) _parse_pdb_header_list: REVDAT is for oldest entry.
Sat, 12 Nov 2016 22:08:30 +0000[Biopython (old issues only) - Bug #2351] (Resolved) Make Seq more like a string, even subclass string?
Sat, 12 Nov 2016 21:00:40 +0000[Biopython (old issues only) - Bug #2948] (Resolved) _parse_pdb_header_list: bug in TITLE handling
Sat, 12 Nov 2016 20:48:27 +0000[Biopython (old issues only) - Bug #2910] (Resolved) Bio.PDB build_peptides sometimes gives shorter peptide sequences than expected
Sat, 12 Nov 2016 20:40:16 +0000[Biopython (old issues only) - Bug #2780] (Resolved) PDB file HETATMs cannot be alternative location of a residue that is an ATOM
Sat, 12 Nov 2016 20:18:24 +0000[Biopython (old issues only) - Bug #2727] (Resolved) PDB.Bio: header should include CRYST1 information
Sat, 12 Nov 2016 20:12:12 +0000[Biopython (old issues only) - Bug #2626] (Resolved) Bio.PDB mmCIFParser parse exceptions
Sat, 12 Nov 2016 20:08:02 +0000[Biopython (old issues only) - Bug #2292] (Resolved) Bio.PDBIO writes TER records without any required fields
Sat, 12 Nov 2016 19:51:37 +0000[Biopython (old issues only) - Bug #2176] XML Blast parser: miscellaneous bug fixes and cleanup
Fri, 11 Nov 2016 14:13:16 +0000Re: Run jython tests on Travis-CI
Thu, 10 Nov 2016 22:09:25 +0000[Biopython (old issues only) - Bug #3156] (Closed) UniProt XML and SwissProt parsers silently fail to parse all of database references
Thu, 10 Nov 2016 16:36:56 +0000Run jython tests on Travis-CI
Thu, 10 Nov 2016 07:56:16 -0700[Biopython (old issues only) - Bug #3155] Some Phylip tools seem to fail on Jython
Thu, 10 Nov 2016 14:43:40 +0000[Biopython (old issues only) - Bug #2509] (Closed) Deprecating the .data property of the Seq and MutableSeq objects
Thu, 10 Nov 2016 02:38:31 +0000[Biopython (old issues only) - Bug #2762] (Closed) GFF capability in SeqIO
Thu, 10 Nov 2016 02:35:41 +0000[Biopython (old issues only) - Bug #2601] (Closed) Seq find() method: proposal
Thu, 10 Nov 2016 02:31:17 +0000[Biopython (old issues only) - Bug #2034] BioPython can't read PHYLIP distance matrix files
Wed, 09 Nov 2016 18:45:14 +0000[Biopython (old issues only) - Bug #2375] (Closed) Coalescent support through Simcoal2
Wed, 09 Nov 2016 18:30:31 +0000[Biopython (old issues only) - Bug #2879] missing __delitem__ in Bio.PDB.Entity.Entity
Wed, 09 Nov 2016 14:33:59 +0000[Biopython (old issues only) - Bug #2693] LogisticRegression convergence criterion is too lenient
Wed, 09 Nov 2016 14:33:27 +0000[Biopython (old issues only) - Bug #3146] DSSP ungraceful failure
Wed, 09 Nov 2016 14:32:40 +0000[Biopython (old issues only) - Bug #3146] DSSP ungraceful failure
Wed, 09 Nov 2016 10:11:46 +0000[Biopython (old issues only) - Bug #3004] (Resolved) PSL alignment format parsing
Wed, 09 Nov 2016 10:09:16 +0000[Biopython (old issues only) - Bug #2905] (Closed) Short read alignment format SAM / BAM
Wed, 09 Nov 2016 10:06:24 +0000[Biopython (old issues only) - Bug #2698] (Resolved) Attempt at a unit test for MaxEntrophy
Wed, 09 Nov 2016 10:01:33 +0000[Biopython (old issues only) - Bug #2759] (Resolved) Unit test for Bio.PDB.HSExposure
Wed, 09 Nov 2016 10:01:05 +0000Re: Retiring our old RedMine bug tracker
Wed, 9 Nov 2016 10:00:14 +0000[Biopython (old issues only) - Bug #2759] Unit test for Bio.PDB.HSExposure
Wed, 09 Nov 2016 05:23:44 +0000[Biopython (old issues only) - Bug #2905] Short read alignment format SAM / BAM
Wed, 09 Nov 2016 05:11:55 +0000[Biopython (old issues only) - Bug #3004] PSL alignment format parsing
Wed, 09 Nov 2016 05:04:26 +0000[Biopython (old issues only) - Bug #3146] DSSP ungraceful failure
Wed, 09 Nov 2016 04:55:47 +0000[Biopython (old issues only) - Bug #2879] missing __delitem__ in Bio.PDB.Entity.Entity
Wed, 09 Nov 2016 04:42:36 +0000[Biopython (old issues only) - Bug #2693] LogisticRegression convergence criterion is too lenient
Wed, 09 Nov 2016 04:29:12 +0000Re: Retiring our old RedMine bug tracker
Tue, 8 Nov 2016 21:12:02 -0700[Biopython (old issues only) - Bug #2698] Attempt at a unit test for MaxEntrophy
Wed, 09 Nov 2016 04:09:51 +0000Re: Retiring our old RedMine bug tracker
Tue, 8 Nov 2016 19:32:08 +0000Re: Retiring our old RedMine bug tracker
Tue, 8 Nov 2016 12:14:27 -0700Re: Retiring our old RedMine bug tracker
Tue, 8 Nov 2016 13:57:39 -0500Re: Retiring our old RedMine bug tracker
Tue, 8 Nov 2016 18:41:56 +0000Re: New package submission
Tue, 8 Nov 2016 17:03:39 +0000New package submission
Mon, 7 Nov 2016 19:11:19 -0500Re: code for parsing Cellosaurus
Mon, 7 Nov 2016 14:24:00 +0000Using unittest2 backport for tests under Python 2.7
Wed, 12 Oct 2016 16:12:43 +0100code for parsing Cellosaurus
Thu, 29 Sep 2016 15:59:57 -0400GitHub rebase-and-merge of pull requests
Mon, 26 Sep 2016 15:39:59 +0100Re: [Biopython] Intel Python distribution
Thu, 1 Sep 2016 11:30:59 +0100Fwd: Biopython 1.68 released
Mon, 29 Aug 2016 11:14:56 +0100Re: Biopython 1.68 plans (mid August?)
Mon, 29 Aug 2016 10:36:06 +0100Re: Biopython 1.68 released
Mon, 29 Aug 2016 09:32:00 +0100Re: Biopython 1.68 released
Fri, 26 Aug 2016 22:04:39 +0100Re: Biopython 1.68 plans (mid August?)
Fri, 26 Aug 2016 19:25:20 +0200Re: Draft announcement for Biopython 1.68
Fri, 26 Aug 2016 17:34:14 +0100Biopython 1.68 released
Fri, 26 Aug 2016 17:32:13 +0100Re: Draft announcement for Biopython 1.68
Fri, 26 Aug 2016 17:09:30 +0100Re: Draft announcement for Biopython 1.68
Fri, 26 Aug 2016 12:28:35 +0100Draft announcement for Biopython 1.68
Fri, 26 Aug 2016 09:40:53 +0100Re: Biopython 1.68 plans (mid August?)
Thu, 25 Aug 2016 21:21:12 +0100Re: Biopython 1.68 plans (mid August?)
Thu, 25 Aug 2016 21:15:36 +0100Re: Biopython 1.68 plans (mid August?)
Thu, 25 Aug 2016 19:47:43 +0200Re: Biopython 1.68 plans (mid August?)
Thu, 25 Aug 2016 18:13:32 +0100Re: Biopython 1.68 plans (mid August?)
Thu, 25 Aug 2016 17:57:54 +0100Re: Biopython 1.68 plans (mid August?)
Thu, 25 Aug 2016 12:08:00 +0100Re: Biopython 1.68 plans (mid August?)
Mon, 22 Aug 2016 09:16:43 +0100Re: Biopython 1.68 plans (mid August?)
Mon, 22 Aug 2016 06:53:29 +0000 (UTC)Re: Biopython 1.68 plans (mid August?)
Fri, 12 Aug 2016 08:36:00 +0100Re: Biopython 1.68 plans (mid August?)
Thu, 11 Aug 2016 19:09:58 +0000Re: Biopython 1.68 plans (mid August?)
Thu, 11 Aug 2016 20:03:21 +0100Re: Biopython 1.68 plans (mid August?)
Thu, 11 Aug 2016 13:00:47 -0600Re: Biopython 1.68 plans (mid August?)
Thu, 11 Aug 2016 11:34:12 +0000Re: Biopython 1.68 plans (mid August?)
Thu, 11 Aug 2016 13:30:15 +0200Biopython 1.68 plans (mid August?)
Thu, 11 Aug 2016 10:14:57 +0100Draft CONTRIBUTING file, e.g. for GitHub Pull Requests
Thu, 4 Aug 2016 17:43:05 +0100Re: Retiring our old RedMine bug tracker
Wed, 3 Aug 2016 19:19:36 +0000[Biopython (old issues only) - Feature #3219] (Resolved) Port Biopython documentation to Sphinx
Wed, 03 Aug 2016 16:12:15 +0000Re: Retiring our old RedMine bug tracker
Wed, 3 Aug 2016 17:53:49 +0100[Biopython (old issues only) - Feature #3217] (Closed) Bio.Phylo I/O support for the NeXML format
Wed, 03 Aug 2016 16:33:23 +0000[Biopython (old issues only) - Feature #3194] (Closed) Bio.Phylo export to 'ape' via Rpy2
Wed, 03 Aug 2016 16:47:10 +0000[Biopython (old issues only) - Feature #3326] (Closed) MultipleSeqAlignment should support iterators, not only slice objects
Wed, 03 Aug 2016 16:31:53 +0000[Biopython (old issues only) - Feature #3221] (Resolved) Port the Biopython Tutorial to Sphinx/reStructuredText
Wed, 03 Aug 2016 16:11:43 +0000Re: Email addresses vs GitHub profile in CONTRIB file?
Wed, 3 Aug 2016 17:06:06 +0100Re: Email addresses vs GitHub profile in CONTRIB file?
Wed, 3 Aug 2016 11:52:48 -0400Email addresses vs GitHub profile in CONTRIB file?
Wed, 3 Aug 2016 16:27:23 +0100Re: Adopting BSD 3-Clause license for Biopython?
Wed, 3 Aug 2016 15:41:58 +0100Re: Adopting BSD 3-Clause license for Biopython?
Tue, 2 Aug 2016 14:35:35 +0100Re: Upgrading base Ubuntu on docker images
Sun, 31 Jul 2016 12:25:54 -0600Re: Upgrading base Ubuntu on docker images
Fri, 29 Jul 2016 17:36:51 -0700Re: Upgrading base Ubuntu on docker images
Fri, 29 Jul 2016 13:43:18 -0600Re: Upgrading base Ubuntu on docker images
Fri, 29 Jul 2016 12:09:00 -0700Upgrading base Ubuntu on docker images
Fri, 29 Jul 2016 11:24:30 -0600Re: Docker Container for Biopython
Thu, 28 Jul 2016 16:57:17 -0600Re: Deprecating simcoal and fdisk content in PopGen
Thu, 28 Jul 2016 17:00:23 +0100
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