gmane.comp.python.bio.devel archive

419 archived articles, newest first (page 4 of 5). Latest articles →

CI for Windows
Sat, 19 Nov 2016 13:24:39 -0800
Shyam Saladi <[email protected]> • #12435
[Biopython (old issues only) - Bug #3268] (Closed) Windows and Python 3 specific unicode problem in SeqIO / SeqXML
Fri, 18 Nov 2016 14:33:57 +0000
[email protected] • #12434
[Biopython (old issues only) - Bug #1999] (Closed) new frame translation method
Thu, 17 Nov 2016 22:28:28 +0000
[email protected] • #12433
[Biopython (old issues only) - Bug #3173] (Resolved) Bio.Emboss.Primer3 parser incompatibility with Primer3 version 2.2.3
Thu, 17 Nov 2016 21:06:42 +0000
[email protected] • #12432
[Biopython (old issues only) - Bug #2670] (Closed) Populate seqfeature.display_name
Mon, 14 Nov 2016 23:49:16 +0000
[email protected] • #12431
Re: Retiring our old RedMine bug tracker
Mon, 14 Nov 2016 13:22:13 -0800
Travis Wrightsman <[email protected]> • #12430
Re: Retiring our old RedMine bug tracker
Mon, 14 Nov 2016 17:27:15 +0000
Peter Cock <[email protected]> • #12429
[Biopython (old issues only) - Bug #2382] (Closed) Generic Roche or GSFlex "FASTA" parser
Mon, 14 Nov 2016 17:10:13 +0000
[email protected] • #12428
[Biopython (old issues only) - Bug #2925] (Resolved) false exception in Bio.PDB.NeighborSearch.search
Sat, 12 Nov 2016 22:23:26 +0000
[email protected] • #12427
[Biopython (old issues only) - Bug #2949] (Resolved) _parse_pdb_header_list: REVDAT is for oldest entry.
Sat, 12 Nov 2016 22:08:30 +0000
[email protected] • #12426
[Biopython (old issues only) - Bug #2351] (Resolved) Make Seq more like a string, even subclass string?
Sat, 12 Nov 2016 21:00:40 +0000
[email protected] • #12425
[Biopython (old issues only) - Bug #2948] (Resolved) _parse_pdb_header_list: bug in TITLE handling
Sat, 12 Nov 2016 20:48:27 +0000
[email protected] • #12424
[Biopython (old issues only) - Bug #2910] (Resolved) Bio.PDB build_peptides sometimes gives shorter peptide sequences than expected
Sat, 12 Nov 2016 20:40:16 +0000
[email protected] • #12423
[Biopython (old issues only) - Bug #2780] (Resolved) PDB file HETATMs cannot be alternative location of a residue that is an ATOM
Sat, 12 Nov 2016 20:18:24 +0000
[email protected] • #12422
[Biopython (old issues only) - Bug #2727] (Resolved) PDB.Bio: header should include CRYST1 information
Sat, 12 Nov 2016 20:12:12 +0000
[email protected] • #12421
[Biopython (old issues only) - Bug #2626] (Resolved) Bio.PDB mmCIFParser parse exceptions
Sat, 12 Nov 2016 20:08:02 +0000
[email protected] • #12420
[Biopython (old issues only) - Bug #2292] (Resolved) Bio.PDBIO writes TER records without any required fields
Sat, 12 Nov 2016 19:51:37 +0000
[email protected] • #12419
[Biopython (old issues only) - Bug #2176] XML Blast parser: miscellaneous bug fixes and cleanup
Fri, 11 Nov 2016 14:13:16 +0000
[email protected] • #12418
Re: Run jython tests on Travis-CI
Thu, 10 Nov 2016 22:09:25 +0000
Peter Cock <[email protected]> • #12417
[Biopython (old issues only) - Bug #3156] (Closed) UniProt XML and SwissProt parsers silently fail to parse all of database references
Thu, 10 Nov 2016 16:36:56 +0000
[email protected] • #12416
Run jython tests on Travis-CI
Thu, 10 Nov 2016 07:56:16 -0700
Vincent Davis <[email protected]> • #12415
[Biopython (old issues only) - Bug #3155] Some Phylip tools seem to fail on Jython
Thu, 10 Nov 2016 14:43:40 +0000
[email protected] • #12414
[Biopython (old issues only) - Bug #2509] (Closed) Deprecating the .data property of the Seq and MutableSeq objects
Thu, 10 Nov 2016 02:38:31 +0000
[email protected] • #12413
[Biopython (old issues only) - Bug #2762] (Closed) GFF capability in SeqIO
Thu, 10 Nov 2016 02:35:41 +0000
[email protected] • #12412
[Biopython (old issues only) - Bug #2601] (Closed) Seq find() method: proposal
Thu, 10 Nov 2016 02:31:17 +0000
[email protected] • #12411
[Biopython (old issues only) - Bug #2034] BioPython can't read PHYLIP distance matrix files
Wed, 09 Nov 2016 18:45:14 +0000
[email protected] • #12410
[Biopython (old issues only) - Bug #2375] (Closed) Coalescent support through Simcoal2
Wed, 09 Nov 2016 18:30:31 +0000
[email protected] • #12409
[Biopython (old issues only) - Bug #2879] missing __delitem__ in Bio.PDB.Entity.Entity
Wed, 09 Nov 2016 14:33:59 +0000
[email protected] • #12408
[Biopython (old issues only) - Bug #2693] LogisticRegression convergence criterion is too lenient
Wed, 09 Nov 2016 14:33:27 +0000
[email protected] • #12407
[Biopython (old issues only) - Bug #3146] DSSP ungraceful failure
Wed, 09 Nov 2016 14:32:40 +0000
[email protected] • #12406
[Biopython (old issues only) - Bug #3146] DSSP ungraceful failure
Wed, 09 Nov 2016 10:11:46 +0000
[email protected] • #12405
[Biopython (old issues only) - Bug #3004] (Resolved) PSL alignment format parsing
Wed, 09 Nov 2016 10:09:16 +0000
[email protected] • #12404
[Biopython (old issues only) - Bug #2905] (Closed) Short read alignment format SAM / BAM
Wed, 09 Nov 2016 10:06:24 +0000
[email protected] • #12403
[Biopython (old issues only) - Bug #2698] (Resolved) Attempt at a unit test for MaxEntrophy
Wed, 09 Nov 2016 10:01:33 +0000
[email protected] • #12402
[Biopython (old issues only) - Bug #2759] (Resolved) Unit test for Bio.PDB.HSExposure
Wed, 09 Nov 2016 10:01:05 +0000
[email protected] • #12401
Re: Retiring our old RedMine bug tracker
Wed, 9 Nov 2016 10:00:14 +0000
Peter Cock <[email protected]> • #12400
[Biopython (old issues only) - Bug #2759] Unit test for Bio.PDB.HSExposure
Wed, 09 Nov 2016 05:23:44 +0000
[email protected] • #12399
[Biopython (old issues only) - Bug #2905] Short read alignment format SAM / BAM
Wed, 09 Nov 2016 05:11:55 +0000
[email protected] • #12398
[Biopython (old issues only) - Bug #3004] PSL alignment format parsing
Wed, 09 Nov 2016 05:04:26 +0000
[email protected] • #12397
[Biopython (old issues only) - Bug #3146] DSSP ungraceful failure
Wed, 09 Nov 2016 04:55:47 +0000
[email protected] • #12396
[Biopython (old issues only) - Bug #2879] missing __delitem__ in Bio.PDB.Entity.Entity
Wed, 09 Nov 2016 04:42:36 +0000
[email protected] • #12395
[Biopython (old issues only) - Bug #2693] LogisticRegression convergence criterion is too lenient
Wed, 09 Nov 2016 04:29:12 +0000
[email protected] • #12394
Re: Retiring our old RedMine bug tracker
Tue, 8 Nov 2016 21:12:02 -0700
Vincent Davis <[email protected]> • #12393
[Biopython (old issues only) - Bug #2698] Attempt at a unit test for MaxEntrophy
Wed, 09 Nov 2016 04:09:51 +0000
[email protected] • #12392
Re: Retiring our old RedMine bug tracker
Tue, 8 Nov 2016 19:32:08 +0000
Peter Cock <[email protected]> • #12391
Re: Retiring our old RedMine bug tracker
Tue, 8 Nov 2016 12:14:27 -0700
Vincent Davis <[email protected]> • #12390
Re: Retiring our old RedMine bug tracker
Tue, 8 Nov 2016 13:57:39 -0500
Lenna Peterson <[email protected]> • #12389
Re: Retiring our old RedMine bug tracker
Tue, 8 Nov 2016 18:41:56 +0000
Peter Cock <[email protected]> • #12388
Re: New package submission
Tue, 8 Nov 2016 17:03:39 +0000
Peter Cock <[email protected]> • #12387
New package submission
Mon, 7 Nov 2016 19:11:19 -0500
Bohdan Khomtchouk <[email protected]> • #12386
Re: code for parsing Cellosaurus
Mon, 7 Nov 2016 14:24:00 +0000
Peter Cock <[email protected]> • #12385
Using unittest2 backport for tests under Python 2.7
Wed, 12 Oct 2016 16:12:43 +0100
Peter Cock <[email protected]> • #12384
code for parsing Cellosaurus
Thu, 29 Sep 2016 15:59:57 -0400
Steve Marshall <[email protected]> • #12383
GitHub rebase-and-merge of pull requests
Mon, 26 Sep 2016 15:39:59 +0100
Peter Cock <[email protected]> • #12382
Re: [Biopython] Intel Python distribution
Thu, 1 Sep 2016 11:30:59 +0100
Peter Cock <[email protected]> • #12381
Fwd: Biopython 1.68 released
Mon, 29 Aug 2016 11:14:56 +0100
Peter Cock <[email protected]> • #12380
Re: Biopython 1.68 plans (mid August?)
Mon, 29 Aug 2016 10:36:06 +0100
Peter Cock <[email protected]> • #12379
Re: Biopython 1.68 released
Mon, 29 Aug 2016 09:32:00 +0100
Peter Cock <[email protected]> • #12378
Re: Biopython 1.68 released
Fri, 26 Aug 2016 22:04:39 +0100
Peter Cock <[email protected]> • #12377
Re: Biopython 1.68 plans (mid August?)
Fri, 26 Aug 2016 19:25:20 +0200
Lluís Revilla <[email protected]> • #12376
Re: Draft announcement for Biopython 1.68
Fri, 26 Aug 2016 17:34:14 +0100
Peter Cock <[email protected]> • #12375
Biopython 1.68 released
Fri, 26 Aug 2016 17:32:13 +0100
Peter Cock <[email protected]> • #12374
Re: Draft announcement for Biopython 1.68
Fri, 26 Aug 2016 17:09:30 +0100
Peter Cock <[email protected]> • #12373
Re: Draft announcement for Biopython 1.68
Fri, 26 Aug 2016 12:28:35 +0100
Peter Cock <[email protected]> • #12372
Draft announcement for Biopython 1.68
Fri, 26 Aug 2016 09:40:53 +0100
Peter Cock <[email protected]> • #12371
Re: Biopython 1.68 plans (mid August?)
Thu, 25 Aug 2016 21:21:12 +0100
Peter Cock <[email protected]> • #12370
Re: Biopython 1.68 plans (mid August?)
Thu, 25 Aug 2016 21:15:36 +0100
Peter Cock <[email protected]> • #12369
Re: Biopython 1.68 plans (mid August?)
Thu, 25 Aug 2016 19:47:43 +0200
Lluís Revilla <[email protected]> • #12368
Re: Biopython 1.68 plans (mid August?)
Thu, 25 Aug 2016 18:13:32 +0100
Peter Cock <[email protected]> • #12367
Re: Biopython 1.68 plans (mid August?)
Thu, 25 Aug 2016 17:57:54 +0100
Peter Cock <[email protected]> • #12366
Re: Biopython 1.68 plans (mid August?)
Thu, 25 Aug 2016 12:08:00 +0100
Peter Cock <[email protected]> • #12365
Re: Biopython 1.68 plans (mid August?)
Mon, 22 Aug 2016 09:16:43 +0100
Peter Cock <[email protected]> • #12364
Re: Biopython 1.68 plans (mid August?)
Mon, 22 Aug 2016 06:53:29 +0000 (UTC)
Michiel de Hoon <[email protected]> • #12363
Re: Biopython 1.68 plans (mid August?)
Fri, 12 Aug 2016 08:36:00 +0100
Peter Cock <[email protected]> • #12362
Re: Biopython 1.68 plans (mid August?)
Thu, 11 Aug 2016 19:09:58 +0000
"Fulton, Ben" <[email protected]> • #12361
Re: Biopython 1.68 plans (mid August?)
Thu, 11 Aug 2016 20:03:21 +0100
Peter Cock <[email protected]> • #12360
Re: Biopython 1.68 plans (mid August?)
Thu, 11 Aug 2016 13:00:47 -0600
Tiago Antao <[email protected]> • #12359
Re: Biopython 1.68 plans (mid August?)
Thu, 11 Aug 2016 11:34:12 +0000
Wibowo Arindrarto <[email protected]> • #12358
Re: Biopython 1.68 plans (mid August?)
Thu, 11 Aug 2016 13:30:15 +0200
Christian Brueffer <[email protected]> • #12357
Biopython 1.68 plans (mid August?)
Thu, 11 Aug 2016 10:14:57 +0100
Peter Cock <[email protected]> • #12356
Draft CONTRIBUTING file, e.g. for GitHub Pull Requests
Thu, 4 Aug 2016 17:43:05 +0100
Peter Cock <[email protected]> • #12355
Re: Retiring our old RedMine bug tracker
Wed, 3 Aug 2016 19:19:36 +0000
"Fields, Christopher J" <[email protected]> • #12354
[Biopython (old issues only) - Feature #3219] (Resolved) Port Biopython documentation to Sphinx
Wed, 03 Aug 2016 16:12:15 +0000
[email protected] • #12353
Re: Retiring our old RedMine bug tracker
Wed, 3 Aug 2016 17:53:49 +0100
Peter Cock <[email protected]> • #12352
[Biopython (old issues only) - Feature #3217] (Closed) Bio.Phylo I/O support for the NeXML format
Wed, 03 Aug 2016 16:33:23 +0000
[email protected] • #12351
[Biopython (old issues only) - Feature #3194] (Closed) Bio.Phylo export to 'ape' via Rpy2
Wed, 03 Aug 2016 16:47:10 +0000
[email protected] • #12350
[Biopython (old issues only) - Feature #3326] (Closed) MultipleSeqAlignment should support iterators, not only slice objects
Wed, 03 Aug 2016 16:31:53 +0000
[email protected] • #12349
[Biopython (old issues only) - Feature #3221] (Resolved) Port the Biopython Tutorial to Sphinx/reStructuredText
Wed, 03 Aug 2016 16:11:43 +0000
[email protected] • #12348
Re: Email addresses vs GitHub profile in CONTRIB file?
Wed, 3 Aug 2016 17:06:06 +0100
Peter Cock <[email protected]> • #12347
Re: Email addresses vs GitHub profile in CONTRIB file?
Wed, 3 Aug 2016 11:52:48 -0400
Lenna Peterson <[email protected]> • #12346
Email addresses vs GitHub profile in CONTRIB file?
Wed, 3 Aug 2016 16:27:23 +0100
Peter Cock <[email protected]> • #12345
Re: Adopting BSD 3-Clause license for Biopython?
Wed, 3 Aug 2016 15:41:58 +0100
Peter Cock <[email protected]> • #12344
Re: Adopting BSD 3-Clause license for Biopython?
Tue, 2 Aug 2016 14:35:35 +0100
Peter Cock <[email protected]> • #12343
Re: Upgrading base Ubuntu on docker images
Sun, 31 Jul 2016 12:25:54 -0600
Tiago Antao <[email protected]> • #12342
Re: Upgrading base Ubuntu on docker images
Fri, 29 Jul 2016 17:36:51 -0700
Travis Wrightsman <[email protected]> • #12341
Re: Upgrading base Ubuntu on docker images
Fri, 29 Jul 2016 13:43:18 -0600
Tiago Antao <[email protected]> • #12340
Re: Upgrading base Ubuntu on docker images
Fri, 29 Jul 2016 12:09:00 -0700
Travis Wrightsman <[email protected]> • #12339
Upgrading base Ubuntu on docker images
Fri, 29 Jul 2016 11:24:30 -0600
Tiago Antao <[email protected]> • #12338
Re: Docker Container for Biopython
Thu, 28 Jul 2016 16:57:17 -0600
Tiago Antao <[email protected]> • #12337
Re: Deprecating simcoal and fdisk content in PopGen
Thu, 28 Jul 2016 17:00:23 +0100
Peter Cock <[email protected]> • #12336
lmpx.com only provides a reader for public news (NNTP) servers. It is not affiliated with the servers or forums shown here and is not responsible for the content of articles, which is written by their respective authors.