gmane.science.biology.informatics.conductor archive

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Re: Best practices to find intersection among variants
Wed, 27 Aug 2014 13:52:39 +0000
"Blanchette, Marco" <[email protected]> • #56627
Re: Bioconductor Digest, Vol 138, Issue 27
Wed, 27 Aug 2014 08:25:37 -0400
Anne Deslattes Mays <[email protected]> • #56626
Using custom CDF with 'make.cdf.env'
Wed, 27 Aug 2014 05:11:29 -0700 (PDT)
"Scott Robinson [guest]" <[email protected]> • #56625
What are the best packages to compare multiple DE gene lists?
Wed, 27 Aug 2014 12:48:12 +0200
Stephane Plaisance | VIB | <[email protected]> • #56624
Re: Bioconductor Digest, Vol 138, Issue 27
Wed, 27 Aug 2014 11:42:13 +0100
Laurent Gatto <lg390-KWPb1pKIrIJaa/[email protected]> • #56623
Re: Single sample normalization of single-channel Agilent microarrays
Wed, 27 Aug 2014 10:45:25 +0200
Gabriele Zoppoli <[email protected]> • #56622
Plotting arbitrary lines at Gviz plotTracks
Tue, 26 Aug 2014 09:44:56 +0300
Vinicius Henrique da Silva <[email protected]> • #56621
Probeset/Transcript cluster definitions for HTA2.0 using pdInfoBuilder
Tue, 26 Aug 2014 10:00:36 -0400
Guilherme Rocha <[email protected]> • #56620
ChIPpeakAnno: Invalid row.names length in peaksNearBDP
Tue, 26 Aug 2014 06:42:15 +0000
"Preussner, Jens" <Jens.Preussner-6GLbxAiBP3Zo1qOY/[email protected]> • #56619
Re: Interspecies differential expression of orthologs with Edger
Wed, 27 Aug 2014 11:45:47 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56618
Re: WGCNA: help with comparing multiple GEO studies
Tue, 26 Aug 2014 21:40:41 -0400
Peter Langfelder <[email protected]> • #56617
Re: Interspecies differential expression of orthologs with Edger
Wed, 27 Aug 2014 03:50:49 +0300
assaf www <[email protected]> • #56616
Re: Single sample normalization of single-channel Agilent microarrays
Tue, 26 Aug 2014 16:46:36 -0700
Ryan <[email protected]> • #56615
Re: Interspecies differential expression of orthologs with Edger
Wed, 27 Aug 2014 09:40:42 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56614
Re: ggbio error: Objects of type OrganismDb not supported by autoplot
Tue, 26 Aug 2014 18:57:22 -0400
Tengfei Yin <[email protected]> • #56613
Re: Positional Details with Features through UniProt.ws Ultimately to display as tracks in ggbio
Tue, 26 Aug 2014 18:37:49 -0400
Tengfei Yin <[email protected]> • #56612
Re: plotIdeogram for non-human or mouse genome
Tue, 26 Aug 2014 18:20:10 -0400
Tengfei Yin <[email protected]> • #56611
Re: Interspecies differential expression of orthologs with Edger
Wed, 27 Aug 2014 00:37:49 +0300
assaf www <[email protected]> • #56610
Recent course materials now easily searchable
Tue, 26 Aug 2014 13:55:48 -0700 (PDT)
Dan Tenenbaum <[email protected]> • #56609
Re: Single sample normalization of single-channel Agilent microarrays
Tue, 26 Aug 2014 22:51:58 +0200
Gabriele Zoppoli <[email protected]> • #56608
Re: Single sample normalization of single-channel Agilent microarrays
Tue, 26 Aug 2014 22:48:25 +0200
Gabriele Zoppoli <[email protected]> • #56607
Re: ggbio plot coverage adjusted for library size
Tue, 26 Aug 2014 15:58:01 -0400
Tengfei Yin <[email protected]> • #56606
Re: How does MEDIPS handle multiple mapping of a read
Tue, 26 Aug 2014 12:50:39 -0700
Lukas Chavez <lukas.chavez.mailings-gM/[email protected]> • #56605
Re: autoplot() in ggbio package for txdb object
Tue, 26 Aug 2014 15:45:28 -0400
Tengfei Yin <[email protected]> • #56604
Re: DESeq2 design
Tue, 26 Aug 2014 21:39:15 +0200
Michael Love <[email protected]> • #56603
DESeq2 design
Tue, 26 Aug 2014 11:42:48 -0700 (PDT)
"Guest [guest]" <[email protected]> • #56602
Re: normalization and batch correction across multiple project
Tue, 26 Aug 2014 10:31:55 -0700
Ryan <[email protected]> • #56601
Re: Single sample normalization of single-channel Agilent microarrays
Tue, 26 Aug 2014 10:25:21 -0700
Ryan <[email protected]> • #56600
Re: Best practices to find intersection among variants
Tue, 26 Aug 2014 09:58:27 -0700
Julian Gehring <[email protected]> • #56599
Re: DESeq2: likelihood ratio test
Tue, 26 Aug 2014 11:46:29 -0500
"Nhu Quynh T. Tran" <[email protected]> • #56598
Single sample normalization of single-channel Agilent microarrays
Tue, 26 Aug 2014 09:42:45 -0700 (PDT)
"Gabriele Zoppoli [guest]" <[email protected]> • #56597
Re: How does MEDIPS handle multiple mapping of a read
Tue, 26 Aug 2014 16:28:24 +0000
"Davis, Wade" <[email protected]> • #56596
Re: DESeq2: likelihood ratio test
Tue, 26 Aug 2014 18:22:31 +0200
Michael Love <[email protected]> • #56595
Re: DESeq2: likelihood ratio test
Tue, 26 Aug 2014 10:51:01 -0500
"Nhu Quynh T. Tran" <[email protected]> • #56594
Re: DESeq2: likelihood ratio test
Tue, 26 Aug 2014 15:48:19 +0000
"Tran, Nhu Quynh T" <[email protected]> • #56593
Re: normalization and batch correction across multiple project
Tue, 26 Aug 2014 16:17:05 +0100
Adaikalavan Ramasamy <[email protected]> • #56592
Re: Best practices to find intersection among variants
Tue, 26 Aug 2014 07:58:08 -0700
Michael Lawrence <lawrence.michael-RuTDbSqP/[email protected]> • #56591
Re: topGO
Tue, 26 Aug 2014 10:23:27 -0400
"James W. MacDonald" <[email protected]> • #56590
Re: Best practices to find intersection among variants
Tue, 26 Aug 2014 14:19:28 +0000
"Blanchette, Marco" <[email protected]> • #56589
Re: Best practices to find intersection among variants
Tue, 26 Aug 2014 13:46:25 +0000
"Blanchette, Marco" <[email protected]> • #56588
How does MEDIPS handle multiple mapping of a read
Tue, 26 Aug 2014 02:49:38 -0700 (PDT)
"Allen [guest]" <[email protected]> • #56587
topGO
Tue, 26 Aug 2014 10:06:53 +0200
Steven Stadler <[email protected]> • #56586
Re: Best practices to find intersection among variants
Mon, 25 Aug 2014 18:01:33 -0700
Michael Lawrence <lawrence.michael-RuTDbSqP/[email protected]> • #56585
Re: Best practices to find intersection among variants
Mon, 25 Aug 2014 17:13:56 -0700
Julian Gehring <[email protected]> • #56584
Re: Best practices to find intersection among variants
Mon, 25 Aug 2014 17:12:34 -0700
Julian Gehring <[email protected]> • #56583
Best practices to find intersection among variants
Mon, 25 Aug 2014 23:35:30 +0000
"Blanchette, Marco" <[email protected]> • #56582
Interspecies differential expression of orthologs with Edger
Tue, 26 Aug 2014 09:28:09 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56581
Re: Interspecies differential expression of orthologs with Edger
Mon, 25 Aug 2014 10:45:34 -0700
"Tim Triche, Jr." <[email protected]> • #56580
Re: Shearwater question
Mon, 25 Aug 2014 10:42:03 -0700
"Tim Triche, Jr." <[email protected]> • #56579
Re: GRanges list and reduce function
Mon, 25 Aug 2014 10:13:57 -0700
Martin Morgan <[email protected]> • #56578
Re: DESeq2: likelihood ratio test
Mon, 25 Aug 2014 13:07:06 -0400
Michael Love <[email protected]> • #56577
Re: readRNAMultipleAlignmen - filepath
Mon, 25 Aug 2014 10:48:16 -0400
Alyssa Frazee <[email protected]> • #56576
DESeq2: likelihood ratio test
Mon, 25 Aug 2014 07:24:18 -0500
Quynh Tran <[email protected]> • #56575
Shearwater question
Mon, 25 Aug 2014 21:34:11 +0900
Asma rabe <[email protected]> • #56574
Re: GRanges list and reduce function
Mon, 25 Aug 2014 21:31:08 +0900
Asma rabe <[email protected]> • #56573
Interspecies differential expression of orthologs with Edger
Mon, 25 Aug 2014 12:50:36 +0300
assaf www <[email protected]> • #56572
readRNAMultipleAlignmen - filepath
Sun, 24 Aug 2014 08:07:59 -0700 (PDT)
"KoRR [guest]" <[email protected]> • #56571
Re: genefilter installation error
Sun, 24 Aug 2014 12:52:04 +0100
BEN HAMDA Cherif <[email protected]> • #56570
Re: genefilter installation error
Sun, 24 Aug 2014 03:52:27 -0700
Martin Morgan <[email protected]> • #56569
genefilter installation error
Fri, 22 Aug 2014 13:21:47 -0700
Subinoy Biswas <[email protected]> • #56568
Re: Taking out a plate from a HTS analysis
Thu, 21 Aug 2014 13:59:01 +0100
Rossella Rispoli <[email protected]> • #56567
Re: Should I skip the eBayes step when using Limma for Affymetrix miRNA v1 chip
Sun, 24 Aug 2014 10:59:54 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56566
WGCNA: help with comparing multiple GEO studies
Fri, 22 Aug 2014 16:39:50 -0700
Abhishek Pratap <[email protected]> • #56565
Re: rsqlite for windows from fhcrc
Fri, 22 Aug 2014 13:50:01 -0700
Martin Morgan <[email protected]> • #56564
Re: DESeq: Hypothesis testing in multifactor design
Fri, 22 Aug 2014 11:56:59 -0700
Steve Lianoglou <lianoglou.steve-RuTDbSqP/[email protected]> • #56563
Re: subseq with iranges on reverse strand
Fri, 22 Aug 2014 11:53:22 -0700
Hervé Pagès <[email protected]> • #56562
Re: nearly exact overlaps between GAlignmentPairs and GenomicRanges
Fri, 22 Aug 2014 11:06:36 -0700
Michael Lawrence <michafla-RuTDbSqP/[email protected]> • #56561
Re: DESeq
Fri, 22 Aug 2014 10:57:50 -0700
Steve Lianoglou <lianoglou.steve-RuTDbSqP/[email protected]> • #56560
Re: nearly exact overlaps between GAlignmentPairs and GenomicRanges
Fri, 22 Aug 2014 18:40:06 +0100
Georg Otto <georg.otto-3NbYg/[email protected]> • #56559
DESeq
Fri, 22 Aug 2014 09:58:40 -0700 (PDT)
"cbpp300 [guest]" <[email protected]> • #56558
Re: Problem in K- means clustering
Fri, 22 Aug 2014 09:38:20 -0700
Sonali Arora <[email protected]> • #56557
Re: nearly exact overlaps between GAlignmentPairs and GenomicRanges
Fri, 22 Aug 2014 09:06:29 -0700
Valerie Obenchain <[email protected]> • #56556
Problem in K- means clustering
Fri, 22 Aug 2014 21:32:45 +0530
Aditya Saxena <[email protected]> • #56555
Re: DESeq: Hypothesis testing in multifactor design
Fri, 22 Aug 2014 16:23:37 +0200
Michael Love <[email protected]> • #56554
Re: ggbio error: Objects of type OrganismDb not supported by autoplot
Fri, 22 Aug 2014 10:05:26 -0400
"James W. MacDonald" <[email protected]> • #56553
Re: DESeq: Hypothesis testing in multifactor design
Fri, 22 Aug 2014 07:59:42 -0400
Yanzhu Lin <[email protected]> • #56552
Re: pintersect GRanges with empty results
Fri, 22 Aug 2014 04:06:36 -0700
Michael Lawrence <michafla-RuTDbSqP/[email protected]> • #56551
Should I skip the eBayes step when using Limma for Affymetrix miRNA v1 chip
Fri, 22 Aug 2014 20:50:44 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56550
pintersect GRanges with empty results
Fri, 22 Aug 2014 12:12:40 +0200
Christian Ruckert <cruckert-xhPu7QH+N+StU9/[email protected]> • #56549
Re: Robustspline and two dimentional loess for two color agilent data
Fri, 22 Aug 2014 16:26:03 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56548
Re: Robustspline and two dimentional loess for two color agilent data
Fri, 22 Aug 2014 10:25:51 +0430
samane fazeli <[email protected]> • #56547
Re: nearly exact overlaps between GAlignmentPairs and GenomicRanges
Thu, 21 Aug 2014 21:48:33 -0700
Michael Lawrence <michafla-RuTDbSqP/[email protected]> • #56546
rsqlite for windows from fhcrc
Thu, 21 Aug 2014 22:08:53 -0400
Kasper Daniel Hansen <[email protected]> • #56545
Robustspline and two dimentional loess for two color agilent data
Fri, 22 Aug 2014 10:57:33 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56544
nearly exact overlaps between GAlignmentPairs and GenomicRanges
Thu, 21 Aug 2014 20:59:45 +0100
Georg Otto <georg.otto-3NbYg/[email protected]> • #56543
ggbio error: Objects of type OrganismDb not supported by autoplot
Thu, 21 Aug 2014 16:05:48 +0100
Georg Otto <georg.otto-3NbYg/[email protected]> • #56542
Re: Model Design
Thu, 21 Aug 2014 10:12:08 -0400
"James W. MacDonald" <[email protected]> • #56541
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