gmane.science.biology.informatics.conductor archive

387 archived articles, newest first (page 3 of 4). Latest articles →

removeBatchEffect and random effect
Thu, 4 Sep 2014 16:10:23 +0000
"Rao,Xiayu" <XRao-Q/UuGF2ZTDRxtahE/[email protected]> • #56727
Re: Error running makeTranscriptDbFromGFF in GenomicFeatures
Thu, 4 Sep 2014 15:14:24 +0000
Jon Bråte <jon.brate-numJyZn/[email protected]> • #56726
Re: edgeR factorial experiment contrasts
Thu, 4 Sep 2014 10:39:58 -0400
"James W. MacDonald" <[email protected]> • #56725
Re: Error running makeTranscriptDbFromGFF in GenomicFeatures
Thu, 4 Sep 2014 04:56:40 -0700
Michael Lawrence <lawrence.michael-RuTDbSqP/[email protected]> • #56724
Re: hugene10sttranscriptclusterACCNUM has no mappings
Thu, 4 Sep 2014 08:25:55 +0200
Thomas Pfau <[email protected]> • #56723
GWASTools: quasi-/perfect linear separation
Thu, 4 Sep 2014 03:56:32 -0700 (PDT)
"Danica [guest]" <[email protected]> • #56722
Re: hugene10sttranscriptclusterACCNUM has no mappings
Wed, 03 Sep 2014 17:38:50 -0700
Marc Carlson <[email protected]> • #56721
Re: edgeR factorial experiment contrasts
Wed, 3 Sep 2014 17:38:24 -0400
"James W. MacDonald" <[email protected]> • #56720
Re: edgeR factorial experiment contrasts
Wed, 3 Sep 2014 20:16:56 +0000
Jahn Davik <[email protected]> • #56719
Re: edgeR factorial experiment contrasts
Wed, 3 Sep 2014 20:10:43 +0000
Jahn Davik <[email protected]> • #56718
Re: edgeR factorial experiment contrasts
Wed, 3 Sep 2014 16:06:59 -0400
"James W. MacDonald" <[email protected]> • #56717
Re: DNAStringsSet - remove multiple entries with same name
Wed, 03 Sep 2014 12:14:49 -0700
Hervé Pagès <[email protected]> • #56716
DNAStringsSet - remove multiple entries with same name
Wed, 3 Sep 2014 13:30:24 -0400
deepti anand <[email protected]> • #56715
edgeR factorial experiment contrasts
Wed, 3 Sep 2014 09:39:12 -0700 (PDT)
"Jahn Davik [guest]" <[email protected]> • #56714
Re: FDR default in edgeR
Wed, 3 Sep 2014 10:56:17 -0400
"James W. MacDonald" <[email protected]> • #56713
Re: edgeR contrast
Wed, 3 Sep 2014 10:43:54 -0400
"James W. MacDonald" <[email protected]> • #56712
Job Opening: Computational Biologist @ Genentech Bioinformatics
Wed, 3 Sep 2014 04:26:58 -0700
Michael Lawrence <lawrence.michael-RuTDbSqP/[email protected]> • #56711
Error with autoplot of transcriptDB object
Wed, 3 Sep 2014 11:16:06 +0100
Mark Dunning <[email protected]> • #56710
Plot exon number per gene and transcript lengths
Wed, 3 Sep 2014 09:02:04 +0000
Jon Bråte <jon.brate-numJyZn/[email protected]> • #56709
edgeR contrast
Tue, 2 Sep 2014 10:03:25 +0200
"Pickl, Julia" <[email protected]> • #56708
Re: Model Design
Tue, 2 Sep 2014 16:28:53 +0200
Sander van der Zeeuw <[email protected]> • #56707
edgeR contrast
Tue, 2 Sep 2014 09:24:53 +0200
"Pickl, Julia" <[email protected]> • #56706
FDR default in edgeR
Tue, 2 Sep 2014 21:46:39 -0700
Son Pham <spham-xrR1t/[email protected]> • #56705
Re: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Wed, 3 Sep 2014 09:12:00 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56704
Re: Interspecies differential expression of orthologs with Edger
Wed, 3 Sep 2014 09:08:44 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56703
Re: RUVSeq installation problem
Tue, 2 Sep 2014 10:25:01 -0700
davide risso <[email protected]> • #56702
Re: RUVSeq package installation
Tue, 2 Sep 2014 10:23:21 -0700
davide risso <[email protected]> • #56701
Re: flowviz
Tue, 2 Sep 2014 10:18:14 -0700
Mike <[email protected]> • #56700
Re: edgeR contrast
Tue, 2 Sep 2014 10:34:44 -0400
"James W. MacDonald" <[email protected]> • #56699
Re: Model Design
Tue, 2 Sep 2014 10:19:04 -0400
"James W. MacDonald" <[email protected]> • #56698
Re: Interspecies differential expression of orthologs with Edger
Tue, 2 Sep 2014 15:10:09 +0300
assaf www <[email protected]> • #56697
edgeR contrast
Tue, 2 Sep 2014 03:42:13 -0700 (PDT)
"Julia [guest]" <[email protected]> • #56696
Re: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Mon, 1 Sep 2014 16:49:17 +0100
Nick N <[email protected]> • #56695
Re: QuasR question
Mon, 1 Sep 2014 10:25:20 +0200
Daniel Soronellas <[email protected]> • #56694
Re: Plotting arbitrary lines at Gviz plotTracks
Mon, 1 Sep 2014 09:42:56 +0000
"Hahne, Florian" <florian.hahne-s9ACF+TQ1dFWk0Htik3J/[email protected]> • #56693
Re: QuasR question
Mon, 1 Sep 2014 10:50:09 +0200
Michael Stadler <[email protected]> • #56692
Re: Plotting arbitrary lines at Gviz plotTracks
Mon, 1 Sep 2014 08:29:58 +0000
"Hahne, Florian" <florian.hahne-s9ACF+TQ1dFWk0Htik3J/[email protected]> • #56691
Re: QuasR question
Mon, 1 Sep 2014 10:03:03 +0200
Michael Stadler <[email protected]> • #56690
Re: Question on Gviz
Mon, 1 Sep 2014 07:10:54 +0000
"Hahne, Florian" <florian.hahne-s9ACF+TQ1dFWk0Htik3J/[email protected]> • #56689
Running cufflinks for spliceR
Sun, 31 Aug 2014 11:33:43 -0500
Hanquan Liang <hliang-OYTqUY/[email protected]> • #56688
Re: DESeq2: df error message with nbinomial LRTest
Sun, 31 Aug 2014 15:49:09 +0200
INRA - coutellec <[email protected]> • #56687
Re: DESeq2: df error message with nbinomial LRTest
Sun, 31 Aug 2014 15:16:25 +0200
Michael Love <[email protected]> • #56686
DESeq2: df error message with nbinomial LRTest
Sun, 31 Aug 2014 12:15:18 +0200
INRA - coutellec <[email protected]> • #56685
Re: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Sun, 31 Aug 2014 09:44:28 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56684
Combing Effects (t-stats) from experiment with common reference design?
Sun, 31 Aug 2014 08:58:07 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56683
packages similar to Jetset but for mouse platforms
Sat, 30 Aug 2014 16:16:11 +0200
"Laurent.Pays" <[email protected]> • #56682
Re: Rsubread featureCounts unexpected strand-specifc counts with Ensembl GTF
Fri, 29 Aug 2014 15:44:05 +0100
Kaur Alasoo <[email protected]> • #56681
Re: Probeset/Transcript cluster definitions for HTA2.0 using pdInfoBuilder
Fri, 29 Aug 2014 08:28:47 -0400
Guilherme Rocha <[email protected]> • #56680
Re: [devteam-bioc] parallel BAM sorting with Rsamtools
Fri, 29 Aug 2014 13:36:59 -0700
Jens Reeder <[email protected]> • #56679
Re: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Fri, 29 Aug 2014 10:29:15 +0100
Nick N <[email protected]> • #56678
Re: [devteam-bioc] parallel BAM sorting with Rsamtools
Fri, 29 Aug 2014 13:26:00 -0700
Martin Morgan <[email protected]> • #56677
Re: ChIPpeakAnno: Invalid row.names length in peaksNearBDP
Fri, 29 Aug 2014 20:12:31 +0000
"Zhu, Lihua (Julie)" <Julie.Zhu-3WprALB+yeL2fBVCVOL8/[email protected]> • #56676
Re: questions about gage
Fri, 29 Aug 2014 10:58:33 -0700
Luo Weijun <luo_weijun-/[email protected]> • #56675
Re: parallel BAM sorting with Rsamtools
Fri, 29 Aug 2014 10:36:11 -0700
Ryan <[email protected]> • #56674
parallel BAM sorting with Rsamtools
Fri, 29 Aug 2014 10:32:34 -0700 (PDT)
"Jens Reeder [guest]" <[email protected]> • #56673
Re: IRanges findOverlaps potential bug?
Fri, 29 Aug 2014 10:08:00 -0700
Michael Lawrence <lawrence.michael-RuTDbSqP/[email protected]> • #56672
Re: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Fri, 29 Aug 2014 10:04:52 -0700
Ryan <[email protected]> • #56671
Re: hugene10sttranscriptclusterACCNUM has no mappings
Fri, 29 Aug 2014 10:15:44 -0400
"James W. MacDonald" <[email protected]> • #56670
Re: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Fri, 29 Aug 2014 12:11:49 +0200
Nicolas Delhomme <[email protected]> • #56669
Re: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Fri, 29 Aug 2014 01:42:50 -0700
Ryan <[email protected]> • #56668
hugene10sttranscriptclusterACCNUM has no mappings
Fri, 29 Aug 2014 10:30:37 +0200
Thomas Pfau <[email protected]> • #56667
Re: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Fri, 29 Aug 2014 09:53:55 +0200
Nicolas Delhomme <[email protected]> • #56666
Re: How does MEDIPS handle multiple mapping of a read
Fri, 29 Aug 2014 13:41:45 +0800
Chong Kim San Allen <[email protected]> • #56665
edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Thu, 28 Aug 2014 17:23:51 +0100
Nick N <[email protected]> • #56664
Re: Rsubread featureCounts unexpected strand-specifc counts with Ensembl GTF
Fri, 29 Aug 2014 12:59:31 +1000
Wei Shi <[email protected]> • #56663
Re: Combing Effects (t-stats) from experiment with common reference design?
Thu, 28 Aug 2014 21:21:03 -0400
Atul <[email protected]> • #56662
Re: Combing Effects (t-stats) from experiment with common reference design?
Thu, 28 Aug 2014 15:09:12 -0700
"Ryan C. Thompson" <[email protected]> • #56661
IRanges findOverlaps potential bug?
Thu, 28 Aug 2014 22:09:32 +0200
Arunkumar Srinivasan <[email protected]> • #56660
Re: IRanges
Thu, 28 Aug 2014 21:54:36 +0200
Arunkumar Srinivasan <[email protected]> • #56659
Combing Effects (t-stats) from experiment with common reference design?
Thu, 28 Aug 2014 15:52:47 -0400
Atul <[email protected]> • #56658
Re: heatmap.2: Colv dendrogram doesn't match size of x
Thu, 28 Aug 2014 15:16:58 -0300 (BRT)
[email protected] • #56657
Re: Interspecies differential expression of orthologs with Edger
Thu, 28 Aug 2014 09:42:21 -0700
"Tim Triche, Jr." <[email protected]> • #56656
Re: Interspecies differential expression of orthologs with Edger
Thu, 28 Aug 2014 18:37:04 +0300
assaf www <[email protected]> • #56655
Re: What are the best packages to compare multiple DE gene lists?
Thu, 28 Aug 2014 10:38:20 -0400
"James W. MacDonald" <[email protected]> • #56654
Re: What are the best packages to compare multiple DE gene lists?
Thu, 28 Aug 2014 10:50:01 +0200
Stephane Plaisance | VIB | <[email protected]> • #56653
Re: What are the best packages to compare multiple DE gene lists?
Thu, 28 Aug 2014 10:11:43 +0200
Jose Garcia <[email protected]> • #56652
Re: What are the best packages to compare multiple DE gene lists?
Thu, 28 Aug 2014 09:03:38 +0200
Stephane Plaisance | VIB | <[email protected]> • #56651
Re: How does MEDIPS handle multiple mapping of a read
Thu, 28 Aug 2014 01:07:26 +0800
Chong Kim San Allen <[email protected]> • #56650
normalization and batch correction across multiple project
Thu, 28 Aug 2014 11:01:59 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56649
Re: Interspecies differential expression of orthologs with Edger
Thu, 28 Aug 2014 09:47:43 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56648
Re: heatmap.2: Colv dendrogram doesn't match size of x
Wed, 27 Aug 2014 19:47:46 -0400
Sean Davis <sdavis2-2loH/[email protected]> • #56647
heatmap.2: Colv dendrogram doesn't match size of x
Wed, 27 Aug 2014 20:06:56 -0300 (BRT)
[email protected] • #56646
Re: How does MEDIPS handle multiple mapping of a read
Wed, 27 Aug 2014 15:48:35 -0700
Lukas Chavez <lukas.chavez.mailings-gM/[email protected]> • #56645
Re: getting normalized expression values from GEO GSE files
Wed, 27 Aug 2014 18:28:52 -0400
Levi Waldron <levi.waldron-MsIb6qd8x9oVuX/[email protected]> • #56644
Re: getting normalized expression values from GEO GSE files
Wed, 27 Aug 2014 17:21:57 -0400
"James W. MacDonald" <[email protected]> • #56643
getting normalized expression values from GEO GSE files
Wed, 27 Aug 2014 23:18:34 +0300
Maria Kesa <[email protected]> • #56642
Re: Interspecies differential expression of orthologs with Edger
Wed, 27 Aug 2014 21:07:11 +0300
assaf www <[email protected]> • #56641
Re: Bioconductor Digest, Vol 138, Issue 27
Wed, 27 Aug 2014 13:29:20 -0400
Tengfei Yin <[email protected]> • #56640
Re: Interspecies differential expression of orthologs with Edger
Wed, 27 Aug 2014 09:39:10 -0700
Ryan <[email protected]> • #56639
Re: Interspecies differential expression of orthologs with Edger
Wed, 27 Aug 2014 19:30:11 +0300
assaf www <[email protected]> • #56638
Re: Using custom CDF with 'make.cdf.env'
Wed, 27 Aug 2014 15:58:12 +0000
Scott Robinson <[email protected]> • #56637
Re: Using custom CDF with 'make.cdf.env'
Wed, 27 Aug 2014 15:56:28 +0000
Scott Robinson <[email protected]> • #56636
Re: Using custom CDF with 'make.cdf.env'
Wed, 27 Aug 2014 11:51:53 -0400
"James W. MacDonald" <[email protected]> • #56635
Re: Using custom CDF with 'make.cdf.env'
Wed, 27 Aug 2014 11:19:41 -0400
"James W. MacDonald" <[email protected]> • #56634
Re: Interspecies differential expression of orthologs with Edger
Wed, 27 Aug 2014 18:14:22 +0300
assaf www <[email protected]> • #56633
Re: normalization and batch correction across multiple project
Wed, 27 Aug 2014 16:13:03 +0100
Adaikalavan Ramasamy <[email protected]> • #56632
Re: Probeset/Transcript cluster definitions for HTA2.0 using pdInfoBuilder
Wed, 27 Aug 2014 11:08:40 -0400
"James W. MacDonald" <[email protected]> • #56631
Rsubread featureCounts unexpected strand-specifc counts with Ensembl GTF
Wed, 27 Aug 2014 07:53:58 -0700 (PDT)
"Kaur Alasoo [guest]" <[email protected]> • #56630
Re: Using custom CDF with 'make.cdf.env'
Wed, 27 Aug 2014 14:31:39 +0000
Scott Robinson <[email protected]> • #56629
Re: What are the best packages to compare multiple DE gene lists?
Wed, 27 Aug 2014 10:29:31 -0400
"James W. MacDonald" <[email protected]> • #56628
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