gmane.science.biology.informatics.conductor archive
387 archived articles, newest first (page 3 of 4). Latest articles →
removeBatchEffect and random effect
Thu, 4 Sep 2014 16:10:23 +0000Re: Error running makeTranscriptDbFromGFF in GenomicFeatures
Thu, 4 Sep 2014 15:14:24 +0000Re: edgeR factorial experiment contrasts
Thu, 4 Sep 2014 10:39:58 -0400Re: Error running makeTranscriptDbFromGFF in GenomicFeatures
Thu, 4 Sep 2014 04:56:40 -0700Re: hugene10sttranscriptclusterACCNUM has no mappings
Thu, 4 Sep 2014 08:25:55 +0200GWASTools: quasi-/perfect linear separation
Thu, 4 Sep 2014 03:56:32 -0700 (PDT)Re: hugene10sttranscriptclusterACCNUM has no mappings
Wed, 03 Sep 2014 17:38:50 -0700Re: edgeR factorial experiment contrasts
Wed, 3 Sep 2014 17:38:24 -0400Re: edgeR factorial experiment contrasts
Wed, 3 Sep 2014 20:16:56 +0000Re: edgeR factorial experiment contrasts
Wed, 3 Sep 2014 20:10:43 +0000Re: edgeR factorial experiment contrasts
Wed, 3 Sep 2014 16:06:59 -0400Re: DNAStringsSet - remove multiple entries with same name
Wed, 03 Sep 2014 12:14:49 -0700DNAStringsSet - remove multiple entries with same name
Wed, 3 Sep 2014 13:30:24 -0400edgeR factorial experiment contrasts
Wed, 3 Sep 2014 09:39:12 -0700 (PDT)Re: FDR default in edgeR
Wed, 3 Sep 2014 10:56:17 -0400Re: edgeR contrast
Wed, 3 Sep 2014 10:43:54 -0400Job Opening: Computational Biologist @ Genentech Bioinformatics
Wed, 3 Sep 2014 04:26:58 -0700Error with autoplot of transcriptDB object
Wed, 3 Sep 2014 11:16:06 +0100Plot exon number per gene and transcript lengths
Wed, 3 Sep 2014 09:02:04 +0000edgeR contrast
Tue, 2 Sep 2014 10:03:25 +0200Re: Model Design
Tue, 2 Sep 2014 16:28:53 +0200edgeR contrast
Tue, 2 Sep 2014 09:24:53 +0200FDR default in edgeR
Tue, 2 Sep 2014 21:46:39 -0700Re: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Wed, 3 Sep 2014 09:12:00 +1000 (AUS Eastern Standard Time)Re: Interspecies differential expression of orthologs with Edger
Wed, 3 Sep 2014 09:08:44 +1000 (AUS Eastern Standard Time)Re: RUVSeq installation problem
Tue, 2 Sep 2014 10:25:01 -0700Re: RUVSeq package installation
Tue, 2 Sep 2014 10:23:21 -0700Re: flowviz
Tue, 2 Sep 2014 10:18:14 -0700Re: edgeR contrast
Tue, 2 Sep 2014 10:34:44 -0400Re: Model Design
Tue, 2 Sep 2014 10:19:04 -0400Re: Interspecies differential expression of orthologs with Edger
Tue, 2 Sep 2014 15:10:09 +0300edgeR contrast
Tue, 2 Sep 2014 03:42:13 -0700 (PDT)Re: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Mon, 1 Sep 2014 16:49:17 +0100Re: QuasR question
Mon, 1 Sep 2014 10:25:20 +0200Re: Plotting arbitrary lines at Gviz plotTracks
Mon, 1 Sep 2014 09:42:56 +0000Re: QuasR question
Mon, 1 Sep 2014 10:50:09 +0200Re: Plotting arbitrary lines at Gviz plotTracks
Mon, 1 Sep 2014 08:29:58 +0000Re: QuasR question
Mon, 1 Sep 2014 10:03:03 +0200Re: Question on Gviz
Mon, 1 Sep 2014 07:10:54 +0000Running cufflinks for spliceR
Sun, 31 Aug 2014 11:33:43 -0500Re: DESeq2: df error message with nbinomial LRTest
Sun, 31 Aug 2014 15:49:09 +0200Re: DESeq2: df error message with nbinomial LRTest
Sun, 31 Aug 2014 15:16:25 +0200DESeq2: df error message with nbinomial LRTest
Sun, 31 Aug 2014 12:15:18 +0200Re: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Sun, 31 Aug 2014 09:44:28 +1000 (AUS Eastern Standard Time)Combing Effects (t-stats) from experiment with common reference design?
Sun, 31 Aug 2014 08:58:07 +1000 (AUS Eastern Standard Time)packages similar to Jetset but for mouse platforms
Sat, 30 Aug 2014 16:16:11 +0200Re: Rsubread featureCounts unexpected strand-specifc counts with Ensembl GTF
Fri, 29 Aug 2014 15:44:05 +0100Re: Probeset/Transcript cluster definitions for HTA2.0 using pdInfoBuilder
Fri, 29 Aug 2014 08:28:47 -0400Re: [devteam-bioc] parallel BAM sorting with Rsamtools
Fri, 29 Aug 2014 13:36:59 -0700Re: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Fri, 29 Aug 2014 10:29:15 +0100Re: [devteam-bioc] parallel BAM sorting with Rsamtools
Fri, 29 Aug 2014 13:26:00 -0700Re: ChIPpeakAnno: Invalid row.names length in peaksNearBDP
Fri, 29 Aug 2014 20:12:31 +0000Re: questions about gage
Fri, 29 Aug 2014 10:58:33 -0700Re: parallel BAM sorting with Rsamtools
Fri, 29 Aug 2014 10:36:11 -0700parallel BAM sorting with Rsamtools
Fri, 29 Aug 2014 10:32:34 -0700 (PDT)Re: IRanges findOverlaps potential bug?
Fri, 29 Aug 2014 10:08:00 -0700Re: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Fri, 29 Aug 2014 10:04:52 -0700Re: hugene10sttranscriptclusterACCNUM has no mappings
Fri, 29 Aug 2014 10:15:44 -0400Re: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Fri, 29 Aug 2014 12:11:49 +0200Re: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Fri, 29 Aug 2014 01:42:50 -0700hugene10sttranscriptclusterACCNUM has no mappings
Fri, 29 Aug 2014 10:30:37 +0200Re: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Fri, 29 Aug 2014 09:53:55 +0200Re: How does MEDIPS handle multiple mapping of a read
Fri, 29 Aug 2014 13:41:45 +0800edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Thu, 28 Aug 2014 17:23:51 +0100Re: Rsubread featureCounts unexpected strand-specifc counts with Ensembl GTF
Fri, 29 Aug 2014 12:59:31 +1000Re: Combing Effects (t-stats) from experiment with common reference design?
Thu, 28 Aug 2014 21:21:03 -0400Re: Combing Effects (t-stats) from experiment with common reference design?
Thu, 28 Aug 2014 15:09:12 -0700IRanges findOverlaps potential bug?
Thu, 28 Aug 2014 22:09:32 +0200Re: IRanges
Thu, 28 Aug 2014 21:54:36 +0200Combing Effects (t-stats) from experiment with common reference design?
Thu, 28 Aug 2014 15:52:47 -0400Re: heatmap.2: Colv dendrogram doesn't match size of x
Thu, 28 Aug 2014 15:16:58 -0300 (BRT)Re: Interspecies differential expression of orthologs with Edger
Thu, 28 Aug 2014 09:42:21 -0700Re: Interspecies differential expression of orthologs with Edger
Thu, 28 Aug 2014 18:37:04 +0300Re: What are the best packages to compare multiple DE gene lists?
Thu, 28 Aug 2014 10:38:20 -0400Re: What are the best packages to compare multiple DE gene lists?
Thu, 28 Aug 2014 10:50:01 +0200Re: What are the best packages to compare multiple DE gene lists?
Thu, 28 Aug 2014 10:11:43 +0200Re: What are the best packages to compare multiple DE gene lists?
Thu, 28 Aug 2014 09:03:38 +0200Re: How does MEDIPS handle multiple mapping of a read
Thu, 28 Aug 2014 01:07:26 +0800normalization and batch correction across multiple project
Thu, 28 Aug 2014 11:01:59 +1000 (AUS Eastern Standard Time)Re: Interspecies differential expression of orthologs with Edger
Thu, 28 Aug 2014 09:47:43 +1000 (AUS Eastern Standard Time)Re: heatmap.2: Colv dendrogram doesn't match size of x
Wed, 27 Aug 2014 19:47:46 -0400heatmap.2: Colv dendrogram doesn't match size of x
Wed, 27 Aug 2014 20:06:56 -0300 (BRT)Re: How does MEDIPS handle multiple mapping of a read
Wed, 27 Aug 2014 15:48:35 -0700Re: getting normalized expression values from GEO GSE files
Wed, 27 Aug 2014 18:28:52 -0400Re: getting normalized expression values from GEO GSE files
Wed, 27 Aug 2014 17:21:57 -0400getting normalized expression values from GEO GSE files
Wed, 27 Aug 2014 23:18:34 +0300Re: Interspecies differential expression of orthologs with Edger
Wed, 27 Aug 2014 21:07:11 +0300Re: Bioconductor Digest, Vol 138, Issue 27
Wed, 27 Aug 2014 13:29:20 -0400Re: Interspecies differential expression of orthologs with Edger
Wed, 27 Aug 2014 09:39:10 -0700Re: Interspecies differential expression of orthologs with Edger
Wed, 27 Aug 2014 19:30:11 +0300Re: Using custom CDF with 'make.cdf.env'
Wed, 27 Aug 2014 15:58:12 +0000Re: Using custom CDF with 'make.cdf.env'
Wed, 27 Aug 2014 15:56:28 +0000Re: Using custom CDF with 'make.cdf.env'
Wed, 27 Aug 2014 11:51:53 -0400Re: Using custom CDF with 'make.cdf.env'
Wed, 27 Aug 2014 11:19:41 -0400Re: Interspecies differential expression of orthologs with Edger
Wed, 27 Aug 2014 18:14:22 +0300Re: normalization and batch correction across multiple project
Wed, 27 Aug 2014 16:13:03 +0100Re: Probeset/Transcript cluster definitions for HTA2.0 using pdInfoBuilder
Wed, 27 Aug 2014 11:08:40 -0400Rsubread featureCounts unexpected strand-specifc counts with Ensembl GTF
Wed, 27 Aug 2014 07:53:58 -0700 (PDT)Re: Using custom CDF with 'make.cdf.env'
Wed, 27 Aug 2014 14:31:39 +0000Re: What are the best packages to compare multiple DE gene lists?
Wed, 27 Aug 2014 10:29:31 -0400
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