gmane.science.biology.informatics.conductor archive

386 archived articles, newest first (page 2 of 4). Latest articles →

Re: barcode support for other platforms
Wed, 10 Sep 2014 10:35:54 +0000
"Johnson, William Evan" <[email protected]> • #56827
barcode support for other platforms
Tue, 9 Sep 2014 18:20:50 -0700 (PDT)
"Romi Admanit [guest]" <[email protected]> • #56826
positively correlated genes
Wed, 10 Sep 2014 11:08:28 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56825
Re: FlowCore Question
Tue, 9 Sep 2014 17:29:45 -0700
Mike <[email protected]> • #56824
Re: Gostats Hypergeometric tests for non model organisms Kegg pathway
Tue, 9 Sep 2014 15:29:29 -0700
Luo Weijun <luo_weijun-/[email protected]> • #56823
Re: How to get genes within a GO category of 'GOstat' results?
Tue, 9 Sep 2014 14:46:21 -0400
"James W. MacDonald" <[email protected]> • #56822
Re: Tissue heterogeneity and TMM normalization
Tue, 9 Sep 2014 13:38:39 -0400
Ni Feng <[email protected]> • #56821
How to get genes within a GO category of 'GOstat' results?
Tue, 9 Sep 2014 13:31:35 -0400
Atul <[email protected]> • #56820
Re: Tissue heterogeneity and TMM normalization
Tue, 9 Sep 2014 09:48:47 -0700
davide risso <[email protected]> • #56819
Re: DiffBind time course
Tue, 9 Sep 2014 15:20:52 +0000
Rory Stark <[email protected]> • #56818
Re: Tissue heterogeneity and TMM normalization
Tue, 9 Sep 2014 10:30:36 -0400
Ni Feng <[email protected]> • #56817
Re: DiffBind time course
Tue, 9 Sep 2014 15:29:19 +0100
Enrico Ferrero <[email protected]> • #56816
Re: Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
Tue, 9 Sep 2014 23:06:44 +0900
Diego Diez <[email protected]> • #56815
Re: DiffBind time course
Tue, 9 Sep 2014 13:43:54 +0000
Rory Stark <[email protected]> • #56814
Re: Interspecies differential expression of orthologs with Edger
Tue, 9 Sep 2014 16:00:36 +0300
assaf www <[email protected]> • #56813
unable to set sampleNames after combine (from beadarray package) on ExpressionSetIllumina
Tue, 9 Sep 2014 11:52:57 +0100
Adaikalavan Ramasamy <[email protected]> • #56812
Gostats Hypergeometric tests for non model organisms Kegg pathway
Tue, 9 Sep 2014 02:18:11 -0700 (PDT)
"Claire [guest]" <[email protected]> • #56811
positively correlated genes
Tue, 9 Sep 2014 01:41:14 -0700 (PDT)
"karthik [guest]" <[email protected]> • #56810
Re: Test Statistic in nbinomialTest in DESeq???
Tue, 9 Sep 2014 10:13:06 +0200
Wolfgang Huber <[email protected]> • #56809
Re: Tissue heterogeneity and TMM normalization
Tue, 9 Sep 2014 09:58:33 +0200
Wolfgang Huber <[email protected]> • #56808
Re: normalization and batch correction across multiple project
Tue, 9 Sep 2014 08:22:49 +0100
Adaikalavan Ramasamy <[email protected]> • #56807
Re: insertion site detection
Tue, 9 Sep 2014 16:09:50 +1000
Wei Shi <[email protected]> • #56806
insertion site detection
Tue, 9 Sep 2014 00:13:06 -0500
Alpesh Querer <[email protected]> • #56805
Re: Rsubread featureCounts unexpected strand-specifc counts with Ensembl GTF
Tue, 9 Sep 2014 14:40:16 +1000
Wei Shi <[email protected]> • #56804
Re: Interspecies differential expression of orthologs with Edger
Tue, 9 Sep 2014 14:26:52 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56803
Consensus sequence
Mon, 8 Sep 2014 22:32:25 -0400
"James W. MacDonald" <[email protected]> • #56802
Re: Converting .gpr files to .csv files
Mon, 8 Sep 2014 22:16:38 -0400
"James W. MacDonald" <[email protected]> • #56801
Re: normalization and batch correction across multiple project
Tue, 9 Sep 2014 12:15:49 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56800
Converting .gpr files to .csv files
Mon, 8 Sep 2014 17:38:43 -0700 (PDT)
"Adriana Charles [guest]" <[email protected]> • #56799
Re: Interspecies differential expression of orthologs with Edger
Tue, 9 Sep 2014 09:47:29 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56798
Re: Interspecies differential expression of orthologs with Edger
Tue, 9 Sep 2014 00:31:05 +0300
assaf www <[email protected]> • #56797
Re: Tissue heterogeneity and TMM normalization
Mon, 08 Sep 2014 14:23:30 -0700
"Ryan C. Thompson" <[email protected]> • #56796
Re: Interspecies differential expression of orthologs with Edger
Mon, 8 Sep 2014 13:55:01 -0700
Steve Lianoglou <lianoglou.steve-RuTDbSqP/[email protected]> • #56795
Re: Interspecies differential expression of orthologs with Edger
Mon, 8 Sep 2014 23:41:39 +0300
assaf www <[email protected]> • #56794
Re: Trouble installing topGO package
Mon, 8 Sep 2014 15:18:24 -0400
Eric Fournier <Eric.Fournier-ZKa8091LwkS/Eul0E0Ng/[email protected]> • #56793
Re: Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
Mon, 8 Sep 2014 14:13:01 -0400
deepti anand <[email protected]> • #56792
Re: HTSeq-Count
Mon, 8 Sep 2014 10:36:51 -0700
Steve Lianoglou <lianoglou.steve-RuTDbSqP/[email protected]> • #56791
Re: normalization and batch correction across multiple project
Mon, 8 Sep 2014 18:35:24 +0100
Adaikalavan Ramasamy <[email protected]> • #56790
Re: Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
Mon, 08 Sep 2014 18:22:28 +0100
Robert Stojnic <[email protected]> • #56789
Re: HTSeq-Count
Mon, 8 Sep 2014 19:08:31 +0200
"Pickl, Julia" <[email protected]> • #56788
Re: HTSeq-Count
Mon, 8 Sep 2014 19:10:38 +0200
"Pickl, Julia" <[email protected]> • #56787
Re: MEDIPS: how does MEDIPS define a methylated region / cluster?
Mon, 8 Sep 2014 10:09:29 -0700
Lukas Chavez <lukas.chavez.mailings-gM/[email protected]> • #56786
Test Statistic in nbinomialTest in DESeq???
Mon, 8 Sep 2014 09:15:58 -0700 (PDT)
"Sarven Sabunciyan [guest]" <[email protected]> • #56785
Tissue heterogeneity and TMM normalization
Mon, 8 Sep 2014 12:15:38 -0400
Ni Feng <[email protected]> • #56784
Re: Interspecies differential expression of orthologs with Edger
Mon, 8 Sep 2014 08:33:24 -0700
Steve Lianoglou <lianoglou.steve-RuTDbSqP/[email protected]> • #56783
DiffBind time course
Mon, 8 Sep 2014 12:01:57 +0100
Enrico Ferrero <[email protected]> • #56782
Re: Interspecies differential expression of orthologs with Edger
Mon, 8 Sep 2014 11:17:31 +0300
assaf www <[email protected]> • #56781
Re: edgeR factorial experiment contrasts
Mon, 8 Sep 2014 06:28:39 +0000
Jahn Davik <[email protected]> • #56780
Consultation about combing batches
Sun, 7 Sep 2014 22:28:16 -0400
Shaowei Wu <[email protected]> • #56779
Re: MEDIPS: how does MEDIPS define a methylated region / cluster?
Mon, 8 Sep 2014 02:10:58 +0800
Chong Kim San Allen <[email protected]> • #56778
Re: MEDIPS: how does MEDIPS define a methylated region / cluster?
Mon, 8 Sep 2014 03:00:09 +0800
Chong Kim San Allen <[email protected]> • #56777
Re: DNAStringsSet - remove multiple entries with same name
Sun, 7 Sep 2014 18:20:06 -0400
deepti anand <[email protected]> • #56776
Re: Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
Sun, 7 Sep 2014 18:17:47 -0400
deepti anand <[email protected]> • #56775
Re: Interspecies differential expression of orthologs with Edger
Sun, 7 Sep 2014 17:01:03 -0400
Sean Davis <sdavis2-2loH/[email protected]> • #56774
Re: Interspecies differential expression of orthologs with Edger
Sun, 7 Sep 2014 22:32:52 +0300
assaf www <[email protected]> • #56773
Re: Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
Sun, 07 Sep 2014 19:38:43 +0100
Robert Stojnic <[email protected]> • #56772
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
Sun, 7 Sep 2014 11:47:20 -0400
deepti anand <[email protected]> • #56771
Re: RNA-seq differentially expressed gene finding methods
Sun, 7 Sep 2014 11:38:58 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56770
RNA-seq differentially expressed gene finding methods
Sun, 7 Sep 2014 11:20:08 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56769
Interspecies differential expression of orthologs with Edger
Sun, 7 Sep 2014 11:11:00 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56768
removeBatchEffect and random effect
Sun, 7 Sep 2014 10:48:00 +1000 (AUS Eastern Standard Time)
Gordon K Smyth <[email protected]> • #56767
Re: RNA-seq differentially expressed gene finding methods
Sat, 6 Sep 2014 21:39:12 +0200
Wolfgang Huber <[email protected]> • #56766
Re: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Fri, 5 Sep 2014 22:31:14 +0100
"Nikolay N." <[email protected]> • #56765
Re: MEDIPS: how does MEDIPS define a methylated region / cluster?
Fri, 5 Sep 2014 20:09:41 -0700
Lukas Chavez <lukas.chavez.mailings-gM/[email protected]> • #56764
Re: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Fri, 05 Sep 2014 15:01:39 -0700
"Ryan C. Thompson" <[email protected]> • #56763
Re: [devteam-bioc] parallel BAM sorting with Rsamtools
Fri, 5 Sep 2014 14:03:58 -0700
Jens Reeder <[email protected]> • #56762
Re: Interspecies differential expression of orthologs with Edger
Fri, 5 Sep 2014 23:22:28 +0300
assaf www <[email protected]> • #56761
Re: HTSeq-Count
Fri, 5 Sep 2014 17:48:42 +0200
"Pickl, Julia" <[email protected]> • #56760
Trouble installing topGO package
Fri, 5 Sep 2014 13:49:43 -0400
Eric Fournier <Eric.Fournier-ZKa8091LwkS/Eul0E0Ng/[email protected]> • #56759
Re: HTSeq-Count
Fri, 5 Sep 2014 13:44:43 -0400
Yuan Hao <[email protected]> • #56758
Re: RNA-seq differentially expressed gene finding methods
Fri, 5 Sep 2014 10:31:25 -0700
Son Pham <spham-xrR1t/[email protected]> • #56757
Re: RNA-seq differentially expressed gene finding methods
Fri, 5 Sep 2014 19:05:10 +0200
Devon Ryan <dpryan-Sj6mpKQPCW/[email protected]> • #56756
Re: RNA-seq differentially expressed gene finding methods
Fri, 5 Sep 2014 12:05:06 -0500
Paul Geeleher <[email protected]> • #56755
Re: RNA-seq differentially expressed gene finding methods
Fri, 5 Sep 2014 12:52:35 -0400
Richard Friedman <[email protected]> • #56754
RNA-seq differentially expressed gene finding methods
Fri, 5 Sep 2014 09:44:01 -0700
Son Pham <spham-xrR1t/[email protected]> • #56753
Re: HTSeq-Count
Fri, 5 Sep 2014 09:35:10 -0700
Steve Lianoglou <lianoglou.steve-RuTDbSqP/[email protected]> • #56752
Re: Access to BiocGenerics 0.11.4 package
Fri, 5 Sep 2014 17:41:06 +0100
gregory voisin <[email protected]> • #56751
Re: Access to BiocGenerics 0.11.4 package
Fri, 5 Sep 2014 09:37:44 -0700
Steve Lianoglou <lianoglou.steve-RuTDbSqP/[email protected]> • #56750
Re: Access to BiocGenerics 0.11.4 package
Fri, 5 Sep 2014 17:31:00 +0100
gregory voisin <[email protected]> • #56749
Re: Access to BiocGenerics 0.11.4 package
Fri, 5 Sep 2014 11:55:18 -0400
"James W. MacDonald" <[email protected]> • #56748
Access to BiocGenerics 0.11.4 package
Fri, 5 Sep 2014 16:45:13 +0100
gregory voisin <[email protected]> • #56747
Re: HTSeq-Count
Fri, 5 Sep 2014 11:17:33 -0400
Yuan Hao <[email protected]> • #56746
HTSeq-Count
Fri, 5 Sep 2014 07:41:05 -0700 (PDT)
"Julia [guest]" <[email protected]> • #56745
virtualArray package
Fri, 5 Sep 2014 01:51:40 -0700 (PDT)
"Karl [guest]" <[email protected]> • #56744
MEDIPS: how does MEDIPS define a methylated region / cluster?
Fri, 5 Sep 2014 01:14:29 -0700 (PDT)
"Allen [guest]" <[email protected]> • #56743
Re: edgeR contrast
Thu, 4 Sep 2014 09:52:51 +0200
"Pickl, Julia" <[email protected]> • #56742
Re: Oligo package: paCalls question
Thu, 04 Sep 2014 23:45:30 +0200
cstrato <[email protected]> • #56741
Re: Oligo package: paCalls question
Thu, 4 Sep 2014 15:49:21 -0400
Alison Ziesel <[email protected]> • #56740
Re: Oligo package: paCalls question
Thu, 4 Sep 2014 15:41:25 -0400
"James W. MacDonald" <[email protected]> • #56739
Re: DNAStringsSet - remove multiple entries with same name
Thu, 04 Sep 2014 12:15:43 -0700
Hervé Pagès <[email protected]> • #56738
Announcement about the new support site
Thu, 04 Sep 2014 12:02:41 -0700
Marc Carlson <[email protected]> • #56737
Re: Oligo package: paCalls question
Thu, 4 Sep 2014 14:50:58 -0400
Alison Ziesel <[email protected]> • #56736
Re: Oligo package: paCalls question
Thu, 4 Sep 2014 14:05:32 -0400
"James W. MacDonald" <[email protected]> • #56735
Re: hugene10sttranscriptclusterACCNUM has no mappings
Thu, 04 Sep 2014 11:01:22 -0700
Marc Carlson <[email protected]> • #56734
Re: hugene10sttranscriptclusterACCNUM has no mappings
Thu, 4 Sep 2014 13:52:22 -0400
"James W. MacDonald" <[email protected]> • #56733
Oligo package: paCalls question
Thu, 4 Sep 2014 13:36:30 -0400
Alison Ziesel <[email protected]> • #56732
Re: SAM analysis of two color microarray data
Thu, 4 Sep 2014 13:09:05 -0400
"James W. MacDonald" <[email protected]> • #56731
Re: hugene10sttranscriptclusterACCNUM has no mappings
Thu, 04 Sep 2014 10:04:39 -0700
Marc Carlson <[email protected]> • #56730
Re: Error running makeTranscriptDbFromGFF in GenomicFeatures
Thu, 4 Sep 2014 09:40:12 -0700
Michael Lawrence <lawrence.michael-RuTDbSqP/[email protected]> • #56729
SAM analysis of two color microarray data
Thu, 4 Sep 2014 09:29:25 -0700 (PDT)
"Shan-e-Ahmed Raza [guest]" <[email protected]> • #56728
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